BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:38.8 nTPM
HPA:38.8 nTPM
GTEx:47.3 nTPM
FANTOM5:43.9 Scaled Tags Per Million
Pig:86.8 nTPM
Mouse:125.1 nTPM
Allen mouse:0.8 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 38.8
Sample id Sample description nTPM
Caudate nucleus
nTPM: 25.1
2288 Male, age 75, left hemisphere 34.6
1781 Male, age 74, unknown 31.2
2289 Male, age 61, right hemisphere 27.0
2846 Female, age 79, unknown 26.3
2481 Female, age 94, left hemisphere 23.2
2290 Female, age 72, unknown 21.5
1857 Female, age 85, left hemisphere 18.8
1854 Male, age 80, left hemisphere 18.0
Claustrum
nTPM: 38.1
2568 Male, age 61, both hemispheres 50.7
2645 Female, age 72, unknown 49.0
2284 Female, age 91, both hemispheres 45.1
2491 Male, age 75, both hemispheres 42.3
2198 Male, age 80, both hemispheres 37.6
2292 Female, age 85, both hemispheres 30.8
2392 Female, age 94, both hemispheres 30.6
1956 Male, age 74, unknown 30.4
2196 Female, age 79, unknown 26.6
Globus pallidus, externus
nTPM: 33.5
2646 Male, age 61, right hemisphere 39.8
2772 Female, age 79, unknown 36.6
2567 Female, age 72, unknown 35.6
1996 Male, age 80, right hemisphere 33.7
2395 Male, age 75, both hemispheres 21.6
Globus pallidus, internus
nTPM: 31.9
1818 Male, age 74, unknown 40.7
2037 Male, age 80, right hemisphere 32.2
2287 Male, age 75, right hemisphere 32.2
2111 Female, age 85, right hemisphere 31.0
2778 Female, age 91, both hemispheres 30.4
2566 Female, age 72, unknown 30.2
2483 Female, age 94, right hemisphere 26.3
Nucleus accumbens
nTPM: 21.7
2286 Male, age 75, left hemisphere 27.9
2824 Male, age 61, right hemisphere 22.1
1783 Male, age 74, unknown 21.9
2391 Female, age 94, left hemisphere 21.3
2698 Female, age 72, unknown 21.3
2732 Male, age 80, right hemisphere 21.2
1806 Female, age 85, left hemisphere 20.3
1856 Female, age 91, right hemisphere 17.6
Nucleus basalis of Meynert
nTPM: 27.4
2569 Male, age 61, both hemispheres 37.8
2484 Female, age 94, left hemisphere 28.4
2821 Male, age 75, both hemispheres 22.4
2393 Male, age 80, right hemisphere 21.0
Nucleus of the diagonal band
nTPM: 32.6
2029 Male, age 61, right hemisphere 40.4
2195 Female, age 85, both hemispheres 35.5
2775 Male, age 80, right hemisphere 32.9
1812 Female, age 91, both hemispheres 30.1
1979 Male, age 74, unknown 24.0
Olfactory tubercle
nTPM: 38.8
2856 Male, age 75, right hemisphere 44.4
1998 Female, age 91, both hemispheres 38.6
2487 Female, age 94, left hemisphere 37.6
1846 Male, age 80, right hemisphere 34.8
Putamen
nTPM: 27.6
2647 Male, age 75, left hemisphere 37.8
2489 Female, age 72, unknown 34.7
1829 Male, age 74, unknown 30.8
2466 Female, age 79, unknown 27.3
2482 Female, age 94, left hemisphere 22.9
1937 Female, age 91, right hemisphere 21.0
1838 Male, age 80, right hemisphere 18.9
Septal nuclei
nTPM: 32.8
1960 Male, age 74, unknown 37.9
2629 Female, age 94, right hemisphere 35.0
2031 Female, age 72, unknown 33.5
2059 Female, age 85, both hemispheres 33.1
2394 Male, age 61, left hemisphere 33.1
2009 Female, age 91, both hemispheres 30.7
2199 Male, age 80, right hemisphere 26.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 47.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 42.2
Samples: 246

Max nTPM: 72.2
Min nTPM: 17.9
Std nTPM: 8.8
Median nTPM: 42.3
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 72.2
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 71.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 63.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 63.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 59.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 59.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 58.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 58.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 58.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 57.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 57.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 39.4
Samples: 246

Max nTPM: 76.8
Min nTPM: 11.4
Std nTPM: 8.7
Median nTPM: 40.6
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 76.8
GTEX-12WSE-0011-R6b-SM-5LZV5 20-29 years, male 64.6
GTEX-13N1W-0011-R6a-SM-5MR43 70-79 years, male 60.0
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 57.5
GTEX-18465-0011-R6a-SM-7LG6M 50-59 years, male 56.4
GTEX-15DYW-0011-R6b-SM-6PALA 60-69 years, female 55.4
GTEX-X4XX-0011-R6B-SM-46MWP 60-69 years, male 53.7
GTEX-13NYB-0011-R6b-SM-5MR51 40-49 years, male 53.4
GTEX-11GSP-0011-R6b-SM-57WBQ 60-69 years, female 52.3
GTEX-139TT-0011-R6b-SM-5J2ON 60-69 years, male 52.2
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 51.4
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Brain - Putamen (basal ganglia)
Average nTPM: 47.3
Samples: 205

Max nTPM: 69.7
Min nTPM: 16.7
Std nTPM: 9.3
Median nTPM: 47.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 69.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 68.0
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 65.3
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 65.0
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 63.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 63.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 63.3
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 63.2
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 63.0
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 62.4
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 62.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 43.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 23.5
FF:10164-103B2 76 years, female 23.5
Globus pallidus
Scaled Tags Per Million: 14.1
FF:10161-103A8 76 years, female 17.3
FF:10175-103C4 60 years, female 11.0
Nucleus accumbens
Scaled Tags Per Million: 43.9
FF:10037-101F1 23-56 years, mixed 43.9
Putamen
Scaled Tags Per Million: 31.6
FF:10176-103C5 60 years, female 31.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 86.8
Pig sample Sample description nTPM
Caudate
nTPM: 69.6
Samples: 4

Max nTPM: 89.0
Min nTPM: 54.8
Sample A Female 54.8
Sample B Female 74.7
Sample C Male 89.0
Sample D Male 59.8
Putamen
nTPM: 86.8
Samples: 4

Max nTPM: 98.2
Min nTPM: 72.4
Sample A Female 85.4
Sample B Female 72.4
Sample C Male 91.1
Sample D Male 98.2
Septum
nTPM: 62.6
Samples: 4

Max nTPM: 69.6
Min nTPM: 56.0
Sample A Female 56.0
Sample B Female 69.6
Sample C Male 60.2
Sample D Male 64.6
Ventral pallidum
nTPM: 82.3
Samples: 4

Max nTPM: 123.6
Min nTPM: 49.6
Sample A Female 49.6
Sample B Female 85.5
Sample C Male 123.6
Sample D Male 70.5

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 125.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 77.7
Samples: 4

Max nTPM: 87.8
Min nTPM: 71.4
Sample A Male 71.4
Sample B Male 76.1
Sample C Female 87.8
Sample D Female 75.6
Septum
nTPM: 69.7
Samples: 4

Max nTPM: 72.4
Min nTPM: 68.0
Sample A Male 72.4
Sample B Male 69.7
Sample C Female 68.5
Sample D Female 68.0
Ventral forebrain
nTPM: 125.1
Samples: 4

Max nTPM: 139.1
Min nTPM: 108.9
Sample A Male 139.1
Sample B Male 108.9
Sample C Female 120.1
Sample D Female 132.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.8
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.3
70723375 Antisense, RP_050705_01_A07, Mouse strain C57BL/6J (56 days, male) 0.5
74750054 Antisense, RP_060220_05_F05, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.8
70723375 Antisense, RP_050705_01_A07, Mouse strain C57BL/6J (56 days, male) 1.1
74750054 Antisense, RP_060220_05_F05, Mouse strain C57BL/6J (56 days, male) 0.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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