MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:757.5 nTPM
HPA:757.5 nTPM
GTEx:936.4 nTPM
FANTOM5:2.1 Scaled Tags Per Million
Pig:82.9 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 757.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 736.4
2586 Male, age 75, left hemisphere 800.8
2666 Male, age 74, left hemisphere 746.5
2828 Female, age 72, unknown 741.4
2411 Female, age 72, unknown 738.8
2219 Male, age 76, both hemispheres 737.7
1870 Female, age 42, unknown 729.6
1833 Male, age 53, unknown 724.1
2019 Male, age 18, unknown 717.5
1830 Male, age 51, unknown 715.9
1827 Male, age 72, unknown 712.0
Dorsal raphe nucleus
nTPM: 738.1
2298 Female, age 72, unknown 762.1
1828 Male, age 53, unknown 736.6
2750 Male, age 76, both hemispheres 736.6
2016 Female, age 72, unknown 733.3
2047 Male, age 72, unknown 721.9
Inferior colliculus
nTPM: 726.0
2849 Male, age 72, unknown 736.8
1890 Male, age 53, unknown 735.8
1848 Female, age 42, unknown 721.9
2097 Female, age 72, unknown 709.4
Median raphe nucleus
nTPM: 732.0
2220 Male, age 76, midline 732.0
Pedunculopontine tegmental nucleus
nTPM: 733.1
2334 Male, age 80, both hemispheres 765.8
2338 Male, age 61, both hemispheres 739.7
1921 Female, age 85, both hemispheres 693.8
Periaquaductal grey, anterior
nTPM: 747.3
2502 Female, age 75, unknown 779.3
1795 Male, age 51, unknown 743.5
1947 Male, age 18, unknown 719.2
Periaquaductal grey, dorsal
nTPM: 729.3
1831 Male, age 72, unknown 737.8
1840 Male, age 53, unknown 735.7
2464 Female, age 72, unknown 727.9
2850 Male, age 76, both hemispheres 715.7
Periaquaductal grey, lateral
nTPM: 716.9
2272 Male, age 74, both hemispheres 722.1
2053 Male, age 18, unknown 721.3
2140 Male, age 76, both hemispheres 707.2
Pretectal area
nTPM: 721.2
2316 Male, age 76, right hemisphere 743.4
1817 Female, age 42, unknown 736.5
2007 Male, age 72, unknown 732.7
2224 Female, age 72, unknown 730.8
1815 Male, age 53, unknown 727.3
1816 Male, age 51, unknown 723.9
2825 Male, age 18, unknown 718.4
2407 Male, age 75, both hemispheres 709.6
2273 Male, age 74, both hemispheres 705.8
2667 Female, age 75, unknown 704.3
1944 Female, age 72, unknown 700.4
Red nucleus
nTPM: 745.9
2503 Female, age 72, unknown 797.9
2769 Male, age 72, unknown 767.1
2584 Male, age 75, left hemisphere 761.7
2227 Male, age 72, unknown 752.6
1865 Male, age 51, unknown 750.8
1904 Male, age 53, unknown 745.8
2725 Female, age 75, unknown 744.8
1821 Female, age 72, unknown 744.2
2785 Male, age 18, unknown 739.9
2588 Male, age 74, left hemisphere 737.3
1954 Female, age 42, unknown 710.9
2823 Male, age 76, right hemisphere 697.9
Substantia nigra
nTPM: 755.9
2699 Male, age 18, unknown 835.6
1851 Male, age 51, unknown 817.4
2665 Male, age 74, both hemispheres 781.3
1916 Female, age 42, unknown 761.7
2590 Female, age 75, unknown 747.0
2409 Female, age 72, unknown 739.2
2583 Male, age 75, right hemisphere 727.8
1889 Female, age 72, unknown 722.7
1941 Male, age 53, unknown 720.7
2241 Male, age 72, unknown 705.3
Superior colliculus
nTPM: 743.3
1995 Male, age 72, unknown 773.8
2587 Male, age 74, left hemisphere 770.7
1913 Female, age 42, unknown 766.4
1796 Male, age 53, unknown 759.5
2664 Male, age 75, both hemispheres 751.9
2668 Female, age 75, unknown 735.4
1839 Male, age 51, unknown 730.6
2261 Male, age 18, unknown 725.2
2087 Female, age 72, unknown 715.5
1895 Male, age 76, right hemisphere 704.1
Ventral tegmental area
nTPM: 757.5
1915 Female, age 42, unknown 789.4
2410 Female, age 72, unknown 768.1
2223 Female, age 72, unknown 763.6
2021 Male, age 53, unknown 758.2
2218 Male, age 76, both hemispheres 737.7
1942 Male, age 51, unknown 727.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 936.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 936.4
Samples: 139

Max nTPM: 2389.4
Min nTPM: 350.4
Std nTPM: 355.6
Median nTPM: 852.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2389.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 2164.7
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 2109.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 2022.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1802.9
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1586.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1551.5
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1549.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 1523.4
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 1520.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 1473.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.1
FF:10158-103A5 76 years, female 2.1

MIDBRAIN - Pig RNA-seqi
Average nTPM 82.9
Pig sample Sample description nTPM
Midbrain
nTPM: 76.2
Samples: 4

Max nTPM: 98.1
Min nTPM: 63.0
Sample A Female 98.1
Sample B Female 79.2
Sample C Male 64.6
Sample D Male 63.0
Periaqueductal gray
nTPM: 65.1
Samples: 3

Max nTPM: 71.9
Min nTPM: 59.1
Sample B Female 64.2
Sample C Male 71.9
Sample D Male 59.1
Substantia nigra
nTPM: 78.8
Samples: 4

Max nTPM: 96.5
Min nTPM: 69.7
Sample A Female 96.5
Sample B Female 75.2
Sample C Male 73.7
Sample D Male 69.7
Superior colliculi
nTPM: 82.9
Samples: 4

Max nTPM: 103.1
Min nTPM: 70.8
Sample A Female 103.1
Sample B Female 83.8
Sample C Male 70.8
Sample D Male 73.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.