MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:132.0 nTPM
HPA:132.0 nTPM
GTEx:180.9 nTPM
FANTOM5:133.7 Scaled Tags Per Million
Pig:105.9 nTPM
Mouse:88.1 nTPM
Allen mouse:6.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 132.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 124.9
2411 Female, age 72, unknown 132.0
2586 Male, age 75, left hemisphere 131.4
2828 Female, age 72, unknown 131.2
1827 Male, age 72, unknown 125.8
2019 Male, age 18, unknown 124.7
1870 Female, age 42, unknown 124.5
2219 Male, age 76, both hemispheres 122.1
1833 Male, age 53, unknown 120.0
2666 Male, age 74, left hemisphere 119.2
1830 Male, age 51, unknown 118.1
Dorsal raphe nucleus
nTPM: 130.6
2298 Female, age 72, unknown 143.3
2750 Male, age 76, both hemispheres 132.3
2047 Male, age 72, unknown 128.0
1828 Male, age 53, unknown 126.5
2016 Female, age 72, unknown 122.7
Inferior colliculus
nTPM: 121.5
2097 Female, age 72, unknown 127.7
1848 Female, age 42, unknown 121.5
1890 Male, age 53, unknown 121.4
2849 Male, age 72, unknown 115.5
Median raphe nucleus
nTPM: 129.9
2220 Male, age 76, midline 129.9
Pedunculopontine tegmental nucleus
nTPM: 124.0
2334 Male, age 80, both hemispheres 126.9
2338 Male, age 61, both hemispheres 122.8
1921 Female, age 85, both hemispheres 122.3
Periaquaductal grey, anterior
nTPM: 128.3
1795 Male, age 51, unknown 131.4
2502 Female, age 75, unknown 127.0
1947 Male, age 18, unknown 126.6
Periaquaductal grey, dorsal
nTPM: 120.4
1840 Male, age 53, unknown 122.7
2464 Female, age 72, unknown 122.1
2850 Male, age 76, both hemispheres 120.7
1831 Male, age 72, unknown 116.1
Periaquaductal grey, lateral
nTPM: 123.1
2272 Male, age 74, both hemispheres 130.6
2140 Male, age 76, both hemispheres 121.3
2053 Male, age 18, unknown 117.5
Pretectal area
nTPM: 126.8
2273 Male, age 74, both hemispheres 135.2
2007 Male, age 72, unknown 133.0
1817 Female, age 42, unknown 130.7
1816 Male, age 51, unknown 130.6
1944 Female, age 72, unknown 127.8
1815 Male, age 53, unknown 127.6
2667 Female, age 75, unknown 127.2
2224 Female, age 72, unknown 126.1
2316 Male, age 76, right hemisphere 123.6
2825 Male, age 18, unknown 121.2
2407 Male, age 75, both hemispheres 112.3
Red nucleus
nTPM: 126.5
2503 Female, age 72, unknown 135.7
2227 Male, age 72, unknown 132.3
2769 Male, age 72, unknown 130.1
2785 Male, age 18, unknown 129.5
1904 Male, age 53, unknown 128.6
2725 Female, age 75, unknown 127.8
1821 Female, age 72, unknown 127.2
1954 Female, age 42, unknown 126.1
1865 Male, age 51, unknown 124.9
2823 Male, age 76, right hemisphere 122.6
2588 Male, age 74, left hemisphere 117.8
2584 Male, age 75, left hemisphere 115.2
Substantia nigra
nTPM: 127.3
1916 Female, age 42, unknown 143.6
1851 Male, age 51, unknown 138.3
2699 Male, age 18, unknown 129.1
1889 Female, age 72, unknown 126.7
2590 Female, age 75, unknown 125.9
1941 Male, age 53, unknown 125.6
2583 Male, age 75, right hemisphere 121.9
2409 Female, age 72, unknown 121.5
2241 Male, age 72, unknown 120.9
2665 Male, age 74, both hemispheres 119.6
Superior colliculus
nTPM: 124.6
1796 Male, age 53, unknown 134.7
2261 Male, age 18, unknown 132.4
1995 Male, age 72, unknown 127.5
2087 Female, age 72, unknown 127.2
1913 Female, age 42, unknown 126.7
2668 Female, age 75, unknown 124.1
2587 Male, age 74, left hemisphere 122.0
2664 Male, age 75, both hemispheres 118.6
1839 Male, age 51, unknown 118.1
1895 Male, age 76, right hemisphere 115.1
Ventral tegmental area
nTPM: 132.0
2410 Female, age 72, unknown 139.3
1915 Female, age 42, unknown 137.2
2218 Male, age 76, both hemispheres 131.2
1942 Male, age 51, unknown 129.8
2223 Female, age 72, unknown 129.1
2021 Male, age 53, unknown 125.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 180.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 180.9
Samples: 139

Max nTPM: 356.2
Min nTPM: 84.0
Std nTPM: 44.3
Median nTPM: 171.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 356.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 325.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 304.8
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 299.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 293.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 285.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 283.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 283.8
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 260.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 247.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 247.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 133.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 133.7
FF:10158-103A5 76 years, female 133.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 105.9
Pig sample Sample description nTPM
Midbrain
nTPM: 105.9
Samples: 4

Max nTPM: 178.5
Min nTPM: 68.5
Sample A Female 178.5
Sample B Female 87.9
Sample C Male 88.7
Sample D Male 68.5
Periaqueductal gray
nTPM: 80.1
Samples: 3

Max nTPM: 91.7
Min nTPM: 74.3
Sample B Female 74.3
Sample C Male 91.7
Sample D Male 74.3
Substantia nigra
nTPM: 102.5
Samples: 4

Max nTPM: 118.5
Min nTPM: 75.2
Sample A Female 118.5
Sample B Female 75.2
Sample C Male 111.7
Sample D Male 104.6
Superior colliculi
nTPM: 89.5
Samples: 4

Max nTPM: 105.5
Min nTPM: 57.0
Sample A Female 99.1
Sample B Female 57.0
Sample C Male 105.5
Sample D Male 96.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.1
Samples: 4

Max nTPM: 102.4
Min nTPM: 76.8
Sample A Male 102.4
Sample B Male 82.8
Sample C Female 76.8
Sample D Female 90.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
68269664 Antisense, RP_041129_02_A05, Mouse strain C57BL/6J (56 days, male) 6.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.