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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:186.4 nTPM
HPA:186.4 nTPM
GTEx:208.0 nTPM
FANTOM5:166.5 Scaled Tags Per Million
Pig:99.1 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 186.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 186.4
2565 Male, age 75, midline 204.8
1981 Female, age 72, midline 185.9
2816 Male, age 47, midline 182.0
2048 Male, age 55, midline 181.3
2194 Female, age 79, both hemispheres 178.3
Cervical spinal cord, dorsal horn
nTPM: 175.3
2173 Female, age 72, unknown 181.5
2721 Male, age 90, both hemispheres 180.0
2296 Male, age 66, both hemispheres 177.9
1877 Male, age 55, unknown 177.1
2069 Male, age 47, both hemispheres 170.3
2297 Male, age 75, both hemispheres 164.9
Cervical spinal cord, ventral horn
nTPM: 182.2
2809 Male, age 90, both hemispheres 192.6
2480 Male, age 75, both hemispheres 190.8
2295 Male, age 66, both hemispheres 188.0
2098 Female, age 72, unknown 182.1
2068 Male, age 55, unknown 173.3
2820 Female, age 79, both hemispheres 166.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 208.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 208.0
Samples: 159

Max nTPM: 328.6
Min nTPM: 130.6
Std nTPM: 38.6
Median nTPM: 206.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 328.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 321.2
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 302.3
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 296.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 292.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 278.3
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 269.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 269.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 267.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 267.0
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 264.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 264.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 264.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 262.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 258.2
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 257.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 255.6
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 254.9
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 254.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 254.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 250.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 248.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 248.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 247.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 247.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 247.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 246.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 245.6
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 244.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 242.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 242.7
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 241.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 241.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 240.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 240.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 239.4
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 238.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 236.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 236.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 236.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 236.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 235.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 234.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 234.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 234.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 234.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 231.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 230.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 229.1
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 228.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 226.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 225.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 224.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 224.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 223.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 220.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 220.4
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 220.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 220.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 219.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 218.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 217.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 217.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 215.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 215.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 214.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 213.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 211.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 211.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 211.3
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 209.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 209.6
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 208.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 207.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 207.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 206.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 206.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 206.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 206.2
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 206.1
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 205.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 205.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 204.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 204.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 203.7
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 201.0
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 201.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 199.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 198.8
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 198.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 198.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 197.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 197.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 196.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 196.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 196.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 196.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 195.3
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 195.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 193.3
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 192.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 191.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 188.2
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 188.1
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 187.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 187.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 187.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 187.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 186.4
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 186.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 186.1
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 185.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 184.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 184.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 183.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 182.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 181.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 181.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 181.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 181.3
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 181.0
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 177.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 176.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 175.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 174.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 172.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 171.6
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 171.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 171.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 170.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 169.9
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 168.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 167.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 167.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 165.1
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 164.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 164.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 162.4
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 161.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 161.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 160.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 159.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 159.6
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 158.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 158.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 158.1
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 155.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 154.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 153.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 152.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 150.9
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 149.7
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 147.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 146.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 145.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 140.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 137.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 132.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 130.6
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 166.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 166.5
FF:10159-103A6 76 years, female 205.0
FF:10181-103D1 60 years, female 128.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 99.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 82.5
Samples: 4

Max nTPM: 90.3
Min nTPM: 73.2
Sample A Female 73.2
Sample B Female 83.4
Sample C Male 90.3
Sample D Male 83.1
Ventral spinal cord
nTPM: 99.1
Samples: 4

Max nTPM: 103.4
Min nTPM: 89.6
Sample A Female 89.6
Sample B Female 99.9
Sample C Male 103.4
Sample D Male 103.4

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