MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:95.5 nTPM
HPA:95.5 nTPM
GTEx:85.6 nTPM
FANTOM5:117.3 Scaled Tags Per Million

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 95.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 90.5
2586 Male, age 75, left hemisphere 95.3
1830 Male, age 51, unknown 94.0
2666 Male, age 74, left hemisphere 93.1
2828 Female, age 72, unknown 93.1
1870 Female, age 42, unknown 91.0
2411 Female, age 72, unknown 90.6
1833 Male, age 53, unknown 89.5
1827 Male, age 72, unknown 89.4
2019 Male, age 18, unknown 86.5
2219 Male, age 76, both hemispheres 82.7
Dorsal raphe nucleus
nTPM: 85.5
2750 Male, age 76, both hemispheres 89.2
2047 Male, age 72, unknown 86.7
1828 Male, age 53, unknown 85.3
2016 Female, age 72, unknown 84.6
2298 Female, age 72, unknown 81.4
Inferior colliculus
nTPM: 83.4
2849 Male, age 72, unknown 85.8
1848 Female, age 42, unknown 85.4
1890 Male, age 53, unknown 83.4
2097 Female, age 72, unknown 78.8
Median raphe nucleus
nTPM: 95.5
2220 Male, age 76, midline 95.5
Pedunculopontine tegmental nucleus
nTPM: 89.4
2334 Male, age 80, both hemispheres 91.7
2338 Male, age 61, both hemispheres 91.7
1921 Female, age 85, both hemispheres 84.8
Periaquaductal grey, anterior
nTPM: 87.2
2502 Female, age 75, unknown 89.0
1795 Male, age 51, unknown 86.6
1947 Male, age 18, unknown 86.1
Periaquaductal grey, dorsal
nTPM: 85.0
2464 Female, age 72, unknown 88.0
2850 Male, age 76, both hemispheres 86.5
1831 Male, age 72, unknown 83.9
1840 Male, age 53, unknown 81.5
Periaquaductal grey, lateral
nTPM: 84.9
2140 Male, age 76, both hemispheres 86.7
2053 Male, age 18, unknown 86.4
2272 Male, age 74, both hemispheres 81.6
Pretectal area
nTPM: 86.2
2407 Male, age 75, both hemispheres 92.0
2316 Male, age 76, right hemisphere 89.6
1815 Male, age 53, unknown 89.0
2825 Male, age 18, unknown 86.8
1817 Female, age 42, unknown 85.7
2007 Male, age 72, unknown 85.6
2667 Female, age 75, unknown 85.4
1944 Female, age 72, unknown 85.0
2224 Female, age 72, unknown 84.7
1816 Male, age 51, unknown 83.7
2273 Male, age 74, both hemispheres 80.7
Red nucleus
nTPM: 92.9
2584 Male, age 75, left hemisphere 96.0
2227 Male, age 72, unknown 95.6
2769 Male, age 72, unknown 94.9
1904 Male, age 53, unknown 94.4
2823 Male, age 76, right hemisphere 93.7
1865 Male, age 51, unknown 93.6
2503 Female, age 72, unknown 92.7
2588 Male, age 74, left hemisphere 92.0
2785 Male, age 18, unknown 91.8
1821 Female, age 72, unknown 90.7
1954 Female, age 42, unknown 90.2
2725 Female, age 75, unknown 88.6
Substantia nigra
nTPM: 89.5
2665 Male, age 74, both hemispheres 95.4
2699 Male, age 18, unknown 94.8
1851 Male, age 51, unknown 92.9
2583 Male, age 75, right hemisphere 92.9
1916 Female, age 42, unknown 90.9
2590 Female, age 75, unknown 90.1
1941 Male, age 53, unknown 87.0
1889 Female, age 72, unknown 86.1
2409 Female, age 72, unknown 83.2
2241 Male, age 72, unknown 82.2
Superior colliculus
nTPM: 88.0
1913 Female, age 42, unknown 97.3
2664 Male, age 75, both hemispheres 90.6
2668 Female, age 75, unknown 90.0
1995 Male, age 72, unknown 89.4
1796 Male, age 53, unknown 88.6
2587 Male, age 74, left hemisphere 87.0
2261 Male, age 18, unknown 86.2
1839 Male, age 51, unknown 85.7
2087 Female, age 72, unknown 83.2
1895 Male, age 76, right hemisphere 82.3
Ventral tegmental area
nTPM: 89.7
2223 Female, age 72, unknown 92.7
2021 Male, age 53, unknown 91.6
1915 Female, age 42, unknown 90.2
2410 Female, age 72, unknown 89.2
1942 Male, age 51, unknown 87.8
2218 Male, age 76, both hemispheres 87.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 85.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 85.6
Samples: 139

Max nTPM: 131.6
Min nTPM: 52.6
Std nTPM: 13.3
Median nTPM: 84.0
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 131.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 128.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 128.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 122.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 115.3
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 105.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 104.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 104.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 104.3
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 103.3
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 102.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 117.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 117.3
FF:10158-103A5 76 years, female 117.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.