MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:405.1 nTPM
HPA:405.1 nTPM
GTEx:393.6 nTPM
FANTOM5:134.3 Scaled Tags Per Million
Pig:219.7 nTPM
Mouse:141.2 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 405.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 400.5
2586 Male, age 75, left hemisphere 494.7
2666 Male, age 74, left hemisphere 447.2
1827 Male, age 72, unknown 444.5
2828 Female, age 72, unknown 418.5
2411 Female, age 72, unknown 381.2
1870 Female, age 42, unknown 377.6
1833 Male, age 53, unknown 366.1
2019 Male, age 18, unknown 361.5
1830 Male, age 51, unknown 357.7
2219 Male, age 76, both hemispheres 356.0
Dorsal raphe nucleus
nTPM: 361.7
2298 Female, age 72, unknown 370.5
2047 Male, age 72, unknown 370.3
2750 Male, age 76, both hemispheres 360.8
1828 Male, age 53, unknown 357.3
2016 Female, age 72, unknown 349.8
Inferior colliculus
nTPM: 380.9
2849 Male, age 72, unknown 403.0
1848 Female, age 42, unknown 381.7
2097 Female, age 72, unknown 373.1
1890 Male, age 53, unknown 366.0
Median raphe nucleus
nTPM: 364.4
2220 Male, age 76, midline 364.4
Pedunculopontine tegmental nucleus
nTPM: 363.6
1921 Female, age 85, both hemispheres 375.1
2334 Male, age 80, both hemispheres 371.1
2338 Male, age 61, both hemispheres 344.6
Periaquaductal grey, anterior
nTPM: 405.1
1795 Male, age 51, unknown 419.0
1947 Male, age 18, unknown 407.0
2502 Female, age 75, unknown 389.4
Periaquaductal grey, dorsal
nTPM: 367.8
1840 Male, age 53, unknown 383.9
2464 Female, age 72, unknown 368.4
1831 Male, age 72, unknown 366.0
2850 Male, age 76, both hemispheres 353.0
Periaquaductal grey, lateral
nTPM: 347.7
2053 Male, age 18, unknown 375.6
2140 Male, age 76, both hemispheres 341.2
2272 Male, age 74, both hemispheres 326.2
Pretectal area
nTPM: 394.2
1816 Male, age 51, unknown 446.5
2007 Male, age 72, unknown 444.7
1817 Female, age 42, unknown 429.6
1944 Female, age 72, unknown 417.2
1815 Male, age 53, unknown 413.5
2407 Male, age 75, both hemispheres 389.5
2825 Male, age 18, unknown 388.9
2667 Female, age 75, unknown 383.0
2224 Female, age 72, unknown 356.0
2316 Male, age 76, right hemisphere 342.0
2273 Male, age 74, both hemispheres 325.3
Red nucleus
nTPM: 368.1
2584 Male, age 75, left hemisphere 420.4
2588 Male, age 74, left hemisphere 404.9
2785 Male, age 18, unknown 383.3
2503 Female, age 72, unknown 375.2
2769 Male, age 72, unknown 368.0
2227 Male, age 72, unknown 362.0
1821 Female, age 72, unknown 360.7
2725 Female, age 75, unknown 358.3
1954 Female, age 42, unknown 348.9
2823 Male, age 76, right hemisphere 347.2
1865 Male, age 51, unknown 345.2
1904 Male, age 53, unknown 343.2
Substantia nigra
nTPM: 368.2
2665 Male, age 74, both hemispheres 409.3
2583 Male, age 75, right hemisphere 405.5
1889 Female, age 72, unknown 397.9
1941 Male, age 53, unknown 380.8
1916 Female, age 42, unknown 375.7
1851 Male, age 51, unknown 372.3
2590 Female, age 75, unknown 364.5
2699 Male, age 18, unknown 345.5
2409 Female, age 72, unknown 323.3
2241 Male, age 72, unknown 307.3
Superior colliculus
nTPM: 398.0
2664 Male, age 75, both hemispheres 460.1
2668 Female, age 75, unknown 431.9
1796 Male, age 53, unknown 427.8
2261 Male, age 18, unknown 402.6
2087 Female, age 72, unknown 391.7
1839 Male, age 51, unknown 383.3
1895 Male, age 76, right hemisphere 375.2
1913 Female, age 42, unknown 374.6
2587 Male, age 74, left hemisphere 370.8
1995 Male, age 72, unknown 362.2
Ventral tegmental area
nTPM: 363.8
1915 Female, age 42, unknown 379.5
1942 Male, age 51, unknown 371.7
2410 Female, age 72, unknown 363.3
2021 Male, age 53, unknown 359.1
2218 Male, age 76, both hemispheres 356.5
2223 Female, age 72, unknown 352.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 393.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 393.6
Samples: 139

Max nTPM: 780.7
Min nTPM: 225.8
Std nTPM: 83.2
Median nTPM: 385.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 780.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 688.6
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 572.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 563.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 550.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 549.6
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 548.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 545.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 539.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 513.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 508.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 134.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 134.3
FF:10158-103A5 76 years, female 134.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 219.7
Pig sample Sample description nTPM
Midbrain
nTPM: 211.2
Samples: 4

Max nTPM: 256.8
Min nTPM: 171.5
Sample A Female 183.4
Sample B Female 171.5
Sample C Male 256.8
Sample D Male 233.2
Periaqueductal gray
nTPM: 160.8
Samples: 3

Max nTPM: 190.4
Min nTPM: 145.3
Sample B Female 145.3
Sample C Male 190.4
Sample D Male 146.8
Substantia nigra
nTPM: 171.6
Samples: 4

Max nTPM: 225.6
Min nTPM: 118.0
Sample A Female 225.6
Sample B Female 137.5
Sample C Male 205.3
Sample D Male 118.0
Superior colliculi
nTPM: 219.7
Samples: 4

Max nTPM: 269.1
Min nTPM: 157.6
Sample A Female 269.1
Sample B Female 157.6
Sample C Male 235.7
Sample D Male 216.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 141.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.2
Samples: 4

Max nTPM: 171.5
Min nTPM: 116.0
Sample A Male 171.5
Sample B Male 130.5
Sample C Female 116.0
Sample D Female 146.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
71487112 Antisense, RP_050913_01_C07, Mouse strain C57BL/6J (56 days, male) 0.3

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The Human Protein Atlas

The Human Protein Atlas project is funded
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