HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:36.5 nTPM
HPA:36.5 nTPM
GTEx:20.6 nTPM
FANTOM5:15.2 Scaled Tags Per Million
Pig:48.9 nTPM
Mouse:66.2 nTPM
Allen mouse:14.7 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 36.5
Sample id Sample description nTPM
Hippocampus
nTPM: 35.6
1855 Male, age 76, left hemisphere 50.0
2148 Female, age 91, left hemisphere 46.3
2621 Female, age 67, right hemisphere 44.8
1898 Male, age 80, left hemisphere 38.8
2529 Female, age 94, left hemisphere 17.5
1911 Female, age 85, right hemisphere 16.4
Dentate gyrus
nTPM: 36.5
2010 Male, age 76, both hemispheres 46.3
2530 Female, age 94, left hemisphere 44.8
1927 Female, age 91, both hemispheres 40.4
2531 Female, age 67, both hemispheres 39.6
2528 Male, age 74, both hemispheres 25.6
2246 Female, age 85, both hemispheres 22.2
Entorhinal gyrus
nTPM: 17.7
2613 Female, age 94, left hemisphere 29.3
2686 Male, age 75, right hemisphere 19.1
2764 Male, age 80, right hemisphere 17.1
1938 Female, age 85, left hemisphere 15.2
1787 Male, age 76, left hemisphere 14.9
2117 Female, age 91, right hemisphere 11.1
Hippocampus, CA1
nTPM: 34.4
2749 Male, age 80, left hemisphere 51.3
1873 Female, age 85, both hemispheres 38.5
2045 Male, age 76, both hemispheres 34.8
2527 Male, age 74, both hemispheres 28.7
2082 Female, age 91, right hemisphere 18.5
Hippocampus, CA2
nTPM: 26.5
1963 Male, age 80, left hemisphere 55.0
1892 Male, age 76, both hemispheres 36.5
2437 Female, age 94, left hemisphere 26.5
2113 Female, age 91, right hemisphere 17.1
2249 Male, age 74, both hemispheres 15.8
1940 Female, age 85, left hemisphere 8.3
Hippocampus, CA3
nTPM: 29.8
2861 Female, age 67, both hemispheres 67.9
2620 Female, age 94, left hemisphere 39.0
2137 Male, age 80, left hemisphere 30.1
1867 Male, age 76, both hemispheres 17.2
2436 Male, age 74, both hemispheres 15.0
1891 Female, age 85, both hemispheres 9.5
Parahippocampal cortex
nTPM: 14.8
2245 Female, age 91, both hemispheres 22.9
2622 Female, age 67, right hemisphere 20.5
2018 Male, age 76, both hemispheres 16.9
2693 Female, age 94, both hemispheres 16.7
1933 Female, age 85, both hemispheres 14.6
2250 Female, age 67, right hemisphere 13.0
2692 Male, age 74, both hemispheres 11.4
1850 Male, age 80, both hemispheres 10.8
2532 Female, age 72, left hemisphere 10.7
1990 Female, age 91, right hemisphere 10.5
Perirhinal gyrus
nTPM: 17.9
2521 Female, age 94, right hemisphere 26.0
1847 Female, age 91, left hemisphere 19.7
2848 Male, age 76, right hemisphere 18.9
1794 Male, age 80, right hemisphere 15.7
1841 Female, age 85, right hemisphere 9.3
Subiculum
nTPM: 12.9
2729 Female, age 91, right hemisphere 23.4
1977 Female, age 85, both hemispheres 12.1
1901 Male, age 80, both hemispheres 11.9
2619 Male, age 74, both hemispheres 11.7
2438 Female, age 94, left hemisphere 9.7
2042 Male, age 76, both hemispheres 8.4

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 20.6
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 20.6
Samples: 197

Max nTPM: 81.9
Min nTPM: 1.8
Std nTPM: 13.8
Median nTPM: 17.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 81.9
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 71.9
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 63.5
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 62.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 58.7
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 58.3
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 58.1
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 53.7
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 46.5
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 45.4
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 45.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 15.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 15.2
FF:10169-103B7 60 years, female 25.1
FF:10153-102I9 76 years, female 5.3

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 48.9
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 45.1
Samples: 4

Max nTPM: 57.4
Min nTPM: 35.2
Sample A Female 57.4
Sample B Female 49.7
Sample C Male 35.2
Sample D Male 38.1
Entorhinal cortex
nTPM: 44.6
Samples: 4

Max nTPM: 51.9
Min nTPM: 35.3
Sample A Female 46.7
Sample B Female 35.3
Sample C Male 51.9
Sample D Male 44.3
Subiculum
nTPM: 45.1
Samples: 4

Max nTPM: 59.1
Min nTPM: 34.3
Sample A Female 59.1
Sample B Female 38.0
Sample C Male 48.9
Sample D Male 34.3
Ventral hippocampus
nTPM: 48.9
Samples: 4

Max nTPM: 59.9
Min nTPM: 33.9
Sample A Female 46.1
Sample B Female 33.9
Sample C Male 59.9
Sample D Male 55.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 66.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 66.2
Samples: 4

Max nTPM: 81.2
Min nTPM: 58.7
Sample A Male 65.4
Sample B Male 58.7
Sample C Female 59.3
Sample D Female 81.2
Hippocampal formation
nTPM: 65.1
Samples: 4

Max nTPM: 74.5
Min nTPM: 58.6
Sample A Male 58.6
Sample B Male 67.1
Sample C Female 74.5
Sample D Female 60.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 14.7
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.7
75551459 Antisense, RP_060523_01_A01, Mouse strain C57BL/6J (56 days, male) 18.3
68911017 Antisense, RP_050203_02_F06, Mouse strain C57BL/6J (56 days, male) 16.1
70919023 Antisense, RP_050712_04_A05, Mouse strain C57BL/6J (56 days, male) 9.7

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The Human Protein Atlas

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