MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:165.0 nTPM
HPA:165.0 nTPM
GTEx:165.2 nTPM
FANTOM5:144.2 Scaled Tags Per Million
Pig:173.8 nTPM
Mouse:128.3 nTPM
Allen mouse:15.6 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 165.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 153.7
2586 Male, age 75, left hemisphere 172.3
2019 Male, age 18, unknown 164.1
1870 Female, age 42, unknown 162.0
2411 Female, age 72, unknown 157.9
2828 Female, age 72, unknown 156.3
1833 Male, age 53, unknown 152.2
1827 Male, age 72, unknown 148.8
1830 Male, age 51, unknown 148.1
2666 Male, age 74, left hemisphere 139.6
2219 Male, age 76, both hemispheres 135.8
Dorsal raphe nucleus
nTPM: 142.5
2750 Male, age 76, both hemispheres 154.2
1828 Male, age 53, unknown 148.6
2016 Female, age 72, unknown 140.6
2298 Female, age 72, unknown 138.1
2047 Male, age 72, unknown 130.8
Inferior colliculus
nTPM: 146.1
1890 Male, age 53, unknown 148.8
2097 Female, age 72, unknown 148.5
1848 Female, age 42, unknown 144.1
2849 Male, age 72, unknown 143.1
Median raphe nucleus
nTPM: 131.6
2220 Male, age 76, midline 131.6
Pedunculopontine tegmental nucleus
nTPM: 139.8
2334 Male, age 80, both hemispheres 144.9
1921 Female, age 85, both hemispheres 144.3
2338 Male, age 61, both hemispheres 130.1
Periaquaductal grey, anterior
nTPM: 143.6
2502 Female, age 75, unknown 151.7
1947 Male, age 18, unknown 139.9
1795 Male, age 51, unknown 139.2
Periaquaductal grey, dorsal
nTPM: 136.2
2464 Female, age 72, unknown 142.1
1840 Male, age 53, unknown 135.2
2850 Male, age 76, both hemispheres 135.1
1831 Male, age 72, unknown 132.5
Periaquaductal grey, lateral
nTPM: 132.7
2053 Male, age 18, unknown 135.7
2140 Male, age 76, both hemispheres 132.4
2272 Male, age 74, both hemispheres 129.9
Pretectal area
nTPM: 150.7
2007 Male, age 72, unknown 166.1
1817 Female, age 42, unknown 165.6
1815 Male, age 53, unknown 165.3
1944 Female, age 72, unknown 159.9
1816 Male, age 51, unknown 158.7
2667 Female, age 75, unknown 152.3
2316 Male, age 76, right hemisphere 142.9
2407 Male, age 75, both hemispheres 141.8
2825 Male, age 18, unknown 138.2
2273 Male, age 74, both hemispheres 133.9
2224 Female, age 72, unknown 132.8
Red nucleus
nTPM: 165.0
2503 Female, age 72, unknown 174.3
2769 Male, age 72, unknown 173.6
1904 Male, age 53, unknown 172.3
2227 Male, age 72, unknown 171.8
2785 Male, age 18, unknown 170.4
1865 Male, age 51, unknown 169.8
1821 Female, age 72, unknown 167.0
2588 Male, age 74, left hemisphere 163.9
1954 Female, age 42, unknown 163.1
2823 Male, age 76, right hemisphere 161.2
2725 Female, age 75, unknown 149.9
2584 Male, age 75, left hemisphere 142.4
Substantia nigra
nTPM: 138.7
1889 Female, age 72, unknown 163.4
2583 Male, age 75, right hemisphere 147.9
1851 Male, age 51, unknown 141.7
2590 Female, age 75, unknown 138.9
2699 Male, age 18, unknown 137.9
2665 Male, age 74, both hemispheres 137.7
2409 Female, age 72, unknown 136.8
1916 Female, age 42, unknown 132.6
1941 Male, age 53, unknown 125.9
2241 Male, age 72, unknown 124.4
Superior colliculus
nTPM: 152.5
1995 Male, age 72, unknown 169.6
1913 Female, age 42, unknown 166.8
2087 Female, age 72, unknown 154.3
2668 Female, age 75, unknown 152.9
1895 Male, age 76, right hemisphere 151.5
2261 Male, age 18, unknown 149.5
2664 Male, age 75, both hemispheres 149.3
1796 Male, age 53, unknown 144.9
1839 Male, age 51, unknown 143.8
2587 Male, age 74, left hemisphere 141.9
Ventral tegmental area
nTPM: 140.1
2410 Female, age 72, unknown 148.7
2223 Female, age 72, unknown 147.6
1942 Male, age 51, unknown 140.2
1915 Female, age 42, unknown 137.0
2021 Male, age 53, unknown 135.3
2218 Male, age 76, both hemispheres 132.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 165.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 165.2
Samples: 139

Max nTPM: 302.0
Min nTPM: 76.4
Std nTPM: 38.9
Median nTPM: 160.6
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 302.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 297.9
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 280.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 255.6
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 248.8
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 240.1
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 239.2
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 234.0
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 228.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 226.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 225.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 144.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 144.2
FF:10158-103A5 76 years, female 144.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 173.8
Pig sample Sample description nTPM
Midbrain
nTPM: 173.8
Samples: 4

Max nTPM: 298.8
Min nTPM: 110.4
Sample A Female 298.8
Sample B Female 155.0
Sample C Male 110.4
Sample D Male 131.0
Periaqueductal gray
nTPM: 116.2
Samples: 3

Max nTPM: 129.2
Min nTPM: 104.3
Sample B Female 129.2
Sample C Male 115.0
Sample D Male 104.3
Substantia nigra
nTPM: 154.3
Samples: 4

Max nTPM: 195.1
Min nTPM: 114.4
Sample A Female 169.2
Sample B Female 114.4
Sample C Male 138.5
Sample D Male 195.1
Superior colliculi
nTPM: 144.7
Samples: 4

Max nTPM: 192.4
Min nTPM: 75.9
Sample A Female 192.4
Sample B Female 75.9
Sample C Male 139.9
Sample D Male 170.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 128.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 128.3
Samples: 4

Max nTPM: 144.0
Min nTPM: 120.4
Sample A Male 144.0
Sample B Male 121.0
Sample C Female 120.4
Sample D Female 127.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.6
69735299 Antisense, RP_050503_02_E05, Mouse strain C57BL/6J (56 days, male) 15.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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