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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:14.9 nTPM
GTEx:14.7 nTPM

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 14.9
Sample id Sample description nTPM
Substantia nigra
nTPM: 14.9
2699 Male, age 18, unknown 20.2
2665 Male, age 74, both hemispheres 18.4
2583 Male, age 75, right hemisphere 17.6
1889 Female, age 72, unknown 17.1
2590 Female, age 75, unknown 15.7
1916 Female, age 42, unknown 14.0
2409 Female, age 72, unknown 12.9
1851 Male, age 51, unknown 12.8
1941 Male, age 53, unknown 11.9
2241 Male, age 72, unknown 8.8

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 14.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.7
Samples: 139

Max nTPM: 49.2
Min nTPM: 3.8
Std nTPM: 7.9
Median nTPM: 13.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 49.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 39.7
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 38.5
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 37.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 36.8
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 36.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 31.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 28.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 28.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 27.5
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 26.7
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 26.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 24.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 24.2
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 23.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 23.1
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 23.0
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 22.7
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 22.3
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 21.5
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 21.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 20.8
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 20.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 20.2
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 19.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 19.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 18.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 18.9
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 18.9
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 18.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 18.5
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 17.9
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 17.8
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 17.8
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 17.5
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 17.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 17.4
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 17.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 17.3
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 17.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 17.2
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 17.1
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 17.0
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 16.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 16.8
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 16.7
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 16.5
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 16.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 16.4
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 15.8
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 15.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 15.6
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 15.6
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 15.6
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 15.5
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 15.5
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 15.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 15.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 15.1
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 14.8
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 14.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 14.7
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 14.7
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 14.5
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 14.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 14.3
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 14.3
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 14.1
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 14.0
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 13.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 13.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 13.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 13.3
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 13.3
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 12.8
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 12.7
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 12.7
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 12.4
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 12.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 12.3
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 12.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 12.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 11.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 11.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 11.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 11.2
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 11.1
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 10.8
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 10.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 10.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 10.1
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 9.9
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 9.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 9.7
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 9.6
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 9.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 9.5
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 8.9
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 8.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 8.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 8.7
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 8.6
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 8.6
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 8.5
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 8.4
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 8.4
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 8.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 8.2
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 8.1
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 8.0
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 7.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 7.7
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 7.7
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 7.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 7.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 7.5
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 7.5
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 7.5
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 7.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 7.4
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 7.3
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 7.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 7.2
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 7.0
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 6.8
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 6.8
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 6.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 6.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 6.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 6.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 6.2
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 6.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 5.8
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 5.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 5.2
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 5.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 4.4
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 4.0
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 3.8
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