BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.7 nTPM
HPA:0.7 nTPM
GTEx:0.9 nTPM
FANTOM5:2.9 Scaled Tags Per Million
Pig:3.6 nTPM
Mouse:0.1 nTPM
Allen mouse:0.0 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA049158Antibody HPA070525Antibody CAB010142
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedNot detected







BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.6
2481 Female, age 94, left hemisphere 0.7
1781 Male, age 74, unknown 0.6
1857 Female, age 85, left hemisphere 0.6
2290 Female, age 72, unknown 0.6
2846 Female, age 79, unknown 0.6
1854 Male, age 80, left hemisphere 0.5
2288 Male, age 75, left hemisphere 0.5
2289 Male, age 61, right hemisphere 0.5
Claustrum
nTPM: 0.5
1956 Male, age 74, unknown 0.6
2196 Female, age 79, unknown 0.5
2198 Male, age 80, both hemispheres 0.5
2284 Female, age 91, both hemispheres 0.5
2292 Female, age 85, both hemispheres 0.5
2392 Female, age 94, both hemispheres 0.5
2491 Male, age 75, both hemispheres 0.4
2568 Male, age 61, both hemispheres 0.4
2645 Female, age 72, unknown 0.4
Globus pallidus, externus
nTPM: 0.6
2646 Male, age 61, right hemisphere 0.7
1996 Male, age 80, right hemisphere 0.6
2395 Male, age 75, both hemispheres 0.6
2772 Female, age 79, unknown 0.6
2567 Female, age 72, unknown 0.5
Globus pallidus, internus
nTPM: 0.6
2287 Male, age 75, right hemisphere 0.8
1818 Male, age 74, unknown 0.7
2037 Male, age 80, right hemisphere 0.7
2483 Female, age 94, right hemisphere 0.6
2566 Female, age 72, unknown 0.6
2111 Female, age 85, right hemisphere 0.5
2778 Female, age 91, both hemispheres 0.5
Nucleus accumbens
nTPM: 0.6
1783 Male, age 74, unknown 0.8
2698 Female, age 72, unknown 0.7
2286 Male, age 75, left hemisphere 0.6
2732 Male, age 80, right hemisphere 0.6
1806 Female, age 85, left hemisphere 0.5
1856 Female, age 91, right hemisphere 0.5
2391 Female, age 94, left hemisphere 0.5
2824 Male, age 61, right hemisphere 0.5
Nucleus basalis of Meynert
nTPM: 0.7
2484 Female, age 94, left hemisphere 0.8
2821 Male, age 75, both hemispheres 0.8
2393 Male, age 80, right hemisphere 0.6
2569 Male, age 61, both hemispheres 0.4
Nucleus of the diagonal band
nTPM: 0.5
1812 Female, age 91, both hemispheres 0.7
1979 Male, age 74, unknown 0.6
2029 Male, age 61, right hemisphere 0.5
2195 Female, age 85, both hemispheres 0.5
2775 Male, age 80, right hemisphere 0.5
Olfactory tubercle
nTPM: 0.5
1998 Female, age 91, both hemispheres 0.6
1846 Male, age 80, right hemisphere 0.5
2487 Female, age 94, left hemisphere 0.5
2856 Male, age 75, right hemisphere 0.5
Putamen
nTPM: 0.6
1838 Male, age 80, right hemisphere 0.9
1829 Male, age 74, unknown 0.7
2466 Female, age 79, unknown 0.7
2482 Female, age 94, left hemisphere 0.6
2489 Female, age 72, unknown 0.6
1937 Female, age 91, right hemisphere 0.5
2647 Male, age 75, left hemisphere 0.5
Septal nuclei
nTPM: 0.5
2009 Female, age 91, both hemispheres 0.6
2031 Female, age 72, unknown 0.6
2394 Male, age 61, left hemisphere 0.6
1960 Male, age 74, unknown 0.5
2199 Male, age 80, right hemisphere 0.5
2629 Female, age 94, right hemisphere 0.5
2059 Female, age 85, both hemispheres 0.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 0.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 0.7
Samples: 246

Max nTPM: 29.2
Min nTPM: 0.0
Std nTPM: 2.1
Median nTPM: 0.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 29.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 13.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 6.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 5.6
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 5.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 2.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 2.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 2.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 2.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 0.5
Samples: 246

Max nTPM: 15.7
Min nTPM: 0.0
Std nTPM: 1.2
Median nTPM: 0.3
GTEX-13OW5-0011-R6b-SM-5O9BW 60-69 years, male 15.7
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 7.8
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 5.4
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 4.2
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 3.6
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 3.5
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 3.4
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 2.8
GTEX-1GF9W-0011-R6b-SM-9QEIE 60-69 years, male 2.4
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 2.3
GTEX-17JCI-0011-R6a-SM-72D6D 60-69 years, female 2.1
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Brain - Putamen (basal ganglia)
Average nTPM: 0.9
Samples: 205

Max nTPM: 23.3
Min nTPM: 0.0
Std nTPM: 1.9
Median nTPM: 0.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 23.3
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 9.9
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 7.6
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 7.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 5.9
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 5.5
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 3.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 2.8
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 2.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 2.8
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 2.5
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.9
FF:10164-103B2 76 years, female 0.9
Globus pallidus
Scaled Tags Per Million: 2.9
FF:10175-103C4 60 years, female 4.7
FF:10161-103A8 76 years, female 1.0
Nucleus accumbens
Scaled Tags Per Million: 0.9
FF:10037-101F1 23-56 years, mixed 0.9
Putamen
Scaled Tags Per Million: 0.4
FF:10176-103C5 60 years, female 0.4

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 3.6
Pig sample Sample description nTPM
Caudate
nTPM: 2.3
Samples: 4

Max nTPM: 2.6
Min nTPM: 1.9
Sample A Female 2.6
Sample B Female 2.4
Sample C Male 2.2
Sample D Male 1.9
Putamen
nTPM: 2.0
Samples: 4

Max nTPM: 3.1
Min nTPM: 1.1
Sample A Female 3.1
Sample B Female 1.9
Sample C Male 1.1
Sample D Male 1.7
Septum
nTPM: 3.6
Samples: 4

Max nTPM: 5.4
Min nTPM: 2.4
Sample A Female 3.7
Sample B Female 2.4
Sample C Male 5.4
Sample D Male 2.9
Ventral pallidum
nTPM: 2.2
Samples: 4

Max nTPM: 2.3
Min nTPM: 2.1
Sample A Female 2.3
Sample B Female 2.1
Sample C Male 2.3
Sample D Male 2.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.2
Samples: 4

Max nTPM: 0.3
Min nTPM: 0.0
Sample A Male 0.3
Sample B Male 0.1
Sample C Female 0.2
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.1
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.2
Sample D Female 0.2

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
80514015 Antisense, RP_071213_03_E02, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
80514015 Antisense, RP_071213_03_E02, Mouse strain C57BL/6J (56 days, male) 0.0

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