MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:48.4 nTPM
HPA:48.4 nTPM
GTEx:14.4 nTPM
FANTOM5:109.4 Scaled Tags Per Million
Pig:46.5 nTPM
Mouse:29.6 nTPM
Allen mouse:0.2 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 48.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.7
1870 Female, age 42, unknown 39.2
2586 Male, age 75, left hemisphere 37.1
2828 Female, age 72, unknown 32.6
2411 Female, age 72, unknown 32.0
1833 Male, age 53, unknown 31.6
1830 Male, age 51, unknown 29.6
2019 Male, age 18, unknown 26.4
1827 Male, age 72, unknown 24.6
2666 Male, age 74, left hemisphere 21.8
2219 Male, age 76, both hemispheres 12.5
Dorsal raphe nucleus
nTPM: 43.7
2016 Female, age 72, unknown 59.1
1828 Male, age 53, unknown 47.5
2047 Male, age 72, unknown 46.9
2298 Female, age 72, unknown 38.4
2750 Male, age 76, both hemispheres 26.8
Inferior colliculus
nTPM: 48.4
1890 Male, age 53, unknown 53.8
2097 Female, age 72, unknown 47.1
1848 Female, age 42, unknown 46.7
2849 Male, age 72, unknown 46.1
Median raphe nucleus
nTPM: 20.9
2220 Male, age 76, midline 20.9
Pedunculopontine tegmental nucleus
nTPM: 23.2
1921 Female, age 85, both hemispheres 27.9
2334 Male, age 80, both hemispheres 26.6
2338 Male, age 61, both hemispheres 15.3
Periaquaductal grey, anterior
nTPM: 31.0
2502 Female, age 75, unknown 40.9
1795 Male, age 51, unknown 26.2
1947 Male, age 18, unknown 25.9
Periaquaductal grey, dorsal
nTPM: 46.8
2850 Male, age 76, both hemispheres 59.1
1840 Male, age 53, unknown 53.0
2464 Female, age 72, unknown 43.5
1831 Male, age 72, unknown 31.8
Periaquaductal grey, lateral
nTPM: 42.0
2140 Male, age 76, both hemispheres 58.8
2053 Male, age 18, unknown 38.9
2272 Male, age 74, both hemispheres 28.4
Pretectal area
nTPM: 28.2
2273 Male, age 74, both hemispheres 43.3
2316 Male, age 76, right hemisphere 36.1
2667 Female, age 75, unknown 34.7
2825 Male, age 18, unknown 33.5
2224 Female, age 72, unknown 32.4
2407 Male, age 75, both hemispheres 26.3
1944 Female, age 72, unknown 25.2
1817 Female, age 42, unknown 22.5
1815 Male, age 53, unknown 22.4
1816 Male, age 51, unknown 21.8
2007 Male, age 72, unknown 12.4
Red nucleus
nTPM: 34.4
1954 Female, age 42, unknown 45.6
1821 Female, age 72, unknown 44.5
2769 Male, age 72, unknown 41.3
2227 Male, age 72, unknown 41.2
2503 Female, age 72, unknown 39.8
1904 Male, age 53, unknown 38.1
1865 Male, age 51, unknown 37.7
2823 Male, age 76, right hemisphere 33.9
2785 Male, age 18, unknown 28.2
2725 Female, age 75, unknown 24.9
2588 Male, age 74, left hemisphere 21.5
2584 Male, age 75, left hemisphere 16.3
Substantia nigra
nTPM: 28.7
2699 Male, age 18, unknown 51.1
2241 Male, age 72, unknown 33.6
1889 Female, age 72, unknown 29.2
2409 Female, age 72, unknown 28.9
1851 Male, age 51, unknown 27.6
1916 Female, age 42, unknown 26.8
2583 Male, age 75, right hemisphere 25.6
2590 Female, age 75, unknown 23.3
1941 Male, age 53, unknown 21.9
2665 Male, age 74, both hemispheres 18.7
Superior colliculus
nTPM: 32.6
1995 Male, age 72, unknown 50.4
1913 Female, age 42, unknown 40.5
2664 Male, age 75, both hemispheres 40.2
1839 Male, age 51, unknown 35.8
2587 Male, age 74, left hemisphere 32.5
2668 Female, age 75, unknown 29.3
1895 Male, age 76, right hemisphere 28.3
2087 Female, age 72, unknown 24.8
1796 Male, age 53, unknown 23.8
2261 Male, age 18, unknown 20.7
Ventral tegmental area
nTPM: 31.0
2223 Female, age 72, unknown 36.8
2410 Female, age 72, unknown 34.8
1942 Male, age 51, unknown 32.8
2021 Male, age 53, unknown 31.8
1915 Female, age 42, unknown 28.7
2218 Male, age 76, both hemispheres 21.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 14.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 14.4
Samples: 139

Max nTPM: 35.7
Min nTPM: 2.8
Std nTPM: 6.4
Median nTPM: 13.3
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 35.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 33.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 33.0
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 30.0
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 29.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 28.0
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 27.9
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 27.0
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 26.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 26.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 26.1
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 109.4
FF:10158-103A5 76 years, female 109.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 46.5
Pig sample Sample description nTPM
Midbrain
nTPM: 46.5
Samples: 4

Max nTPM: 79.4
Min nTPM: 29.3
Sample A Female 79.4
Sample B Female 44.4
Sample C Male 29.3
Sample D Male 32.8
Periaqueductal gray
nTPM: 36.7
Samples: 3

Max nTPM: 39.2
Min nTPM: 32.5
Sample B Female 38.4
Sample C Male 32.5
Sample D Male 39.2
Substantia nigra
nTPM: 40.2
Samples: 4

Max nTPM: 44.2
Min nTPM: 36.3
Sample A Female 42.7
Sample B Female 36.3
Sample C Male 37.4
Sample D Male 44.2
Superior colliculi
nTPM: 30.0
Samples: 4

Max nTPM: 34.4
Min nTPM: 21.0
Sample A Female 34.0
Sample B Female 21.0
Sample C Male 30.6
Sample D Male 34.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 29.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 29.6
Samples: 4

Max nTPM: 30.9
Min nTPM: 27.4
Sample A Male 27.4
Sample B Male 29.6
Sample C Female 30.5
Sample D Female 30.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
73931631 Antisense, RP_051214_04_A11, Mouse strain C57BL/6J (56 days, male) 0.2
70278105 Antisense, RP_050531_02_D12, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.