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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:66.7 nTPM
HPA:66.7 nTPM
GTEx:79.5 nTPM
FANTOM5:160.2 Scaled Tags Per Million
Pig:104.9 nTPM
Mouse:210.6 nTPM
Allen mouse:18.9 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 66.7
Sample id Sample description nTPM
Amygdala
nTPM: 59.6
2814 Male, age 76, right hemisphere 65.7
2514 Male, age 75, right hemisphere 60.7
2517 Female, age 94, left hemisphere 59.4
1987 Female, age 91, left hemisphere 56.9
2695 Female, age 67, right hemisphere 55.2
Basal amygdala
nTPM: 64.5
2243 Female, age 91, right hemisphere 79.2
2110 Male, age 80, left hemisphere 72.0
2685 Female, age 94, left hemisphere 66.7
1955 Male, age 76, both hemispheres 64.1
2609 Male, age 75, right hemisphere 63.0
2827 Female, age 67, right hemisphere 42.3
Central amygdala
nTPM: 63.8
2239 Male, age 80, left hemisphere 72.3
2826 Female, age 94, left hemisphere 69.0
1905 Male, age 76, both hemispheres 61.8
2515 Male, age 75, right hemisphere 59.9
2701 Female, age 91, right hemisphere 56.1
Corticomedial amygdala
nTPM: 66.7
2242 Female, age 91, right hemisphere 83.0
2829 Male, age 80, left hemisphere 81.2
2240 Male, age 76, both hemispheres 66.5
2428 Male, age 75, right hemisphere 59.0
2429 Female, age 94, left hemisphere 56.8
2535 Female, age 67, right hemisphere 53.5
Lateral amygdala
nTPM: 58.4
2534 Female, age 94, left hemisphere 72.9
2256 Male, age 80, left hemisphere 66.3
1883 Male, age 76, both hemispheres 63.3
2255 Female, age 91, right hemisphere 63.0
2516 Male, age 75, right hemisphere 49.2
2830 Female, age 67, right hemisphere 35.6
Stria terminalis, bed nucleus
nTPM: 60.2
1974 Female, age 91, both hemispheres 69.0
2486 Female, age 94, both hemispheres 61.8
2201 Male, age 74, unknown 50.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 79.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 79.5
Samples: 152

Max nTPM: 172.5
Min nTPM: 28.8
Std nTPM: 24.5
Median nTPM: 76.3
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 172.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 152.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 141.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 132.7
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 132.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 130.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 130.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 129.8
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 126.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 121.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 121.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 120.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 118.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 117.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 116.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 113.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 110.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 108.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 108.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 106.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 105.8
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 103.7
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 103.1
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 103.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 102.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 101.6
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 101.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 101.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 100.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 98.2
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 98.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 96.7
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 96.1
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 96.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 95.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 93.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 93.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 93.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 92.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 92.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 91.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 89.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 89.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 89.7
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 89.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 89.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 88.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 88.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 87.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 87.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 86.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 86.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 86.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 85.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 85.2
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 85.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 85.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 84.7
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 84.4
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 84.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 83.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 82.6
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 82.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 81.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 81.8
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 81.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 80.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 79.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 79.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 79.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 78.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 78.2
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 77.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 77.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 77.0
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 76.5
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 76.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 75.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 75.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 74.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 74.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 74.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 73.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 73.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 72.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 72.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 71.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 70.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 70.5
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 70.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 69.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 69.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 69.7
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 69.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 69.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 69.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 69.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 68.6
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 67.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 67.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 66.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 66.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 65.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 64.9
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 64.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 63.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 63.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 63.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 62.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 62.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 61.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 61.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 61.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 60.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 60.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 60.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 59.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 58.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 58.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 58.2
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 57.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 57.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 56.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 56.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 56.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 56.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 55.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 55.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 54.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 53.9
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 53.7
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 53.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 53.4
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 52.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 52.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 51.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 51.3
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 50.9
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 50.9
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 50.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 50.0
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 50.0
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 48.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 48.3
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 48.0
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 47.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 47.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 46.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 45.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 44.1
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 41.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 28.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 160.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 160.2
FF:10151-102I7 76 years, female 160.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 104.9
Pig sample Sample description nTPM
Amygdala
nTPM: 104.9
Samples: 4

Max nTPM: 135.0
Min nTPM: 88.9
Sample A Female 135.0
Sample B Female 92.5
Sample C Male 88.9
Sample D Male 103.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 210.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 210.7
Samples: 4

Max nTPM: 217.7
Min nTPM: 207.3
Sample A Male 209.8
Sample B Male 217.7
Sample C Female 207.8
Sample D Female 207.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 18.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 18.9
2412 Antisense, RP_Baylor_102813, Mouse strain C57BL/6J (56 days, male) 18.9
2411 Antisense, RP_Baylor_102813, Mouse strain C57BL/6J (56 days, male) 5.7

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