MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:60.0 nTPM
HPA:60.0 nTPM
GTEx:46.9 nTPM
FANTOM5:78.2 Scaled Tags Per Million
Pig:98.1 nTPM
Mouse:100.6 nTPM
Allen mouse:7.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 60.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 49.4
2666 Male, age 74, left hemisphere 67.8
2586 Male, age 75, left hemisphere 63.3
2828 Female, age 72, unknown 56.0
2019 Male, age 18, unknown 55.3
1827 Male, age 72, unknown 50.3
1833 Male, age 53, unknown 41.6
1870 Female, age 42, unknown 41.6
1830 Male, age 51, unknown 40.1
2219 Male, age 76, both hemispheres 39.4
2411 Female, age 72, unknown 38.5
Dorsal raphe nucleus
nTPM: 44.9
2047 Male, age 72, unknown 47.5
2298 Female, age 72, unknown 47.5
1828 Male, age 53, unknown 45.6
2750 Male, age 76, both hemispheres 41.9
2016 Female, age 72, unknown 41.7
Inferior colliculus
nTPM: 45.2
2097 Female, age 72, unknown 48.1
2849 Male, age 72, unknown 45.3
1890 Male, age 53, unknown 43.8
1848 Female, age 42, unknown 43.6
Median raphe nucleus
nTPM: 49.6
2220 Male, age 76, midline 49.6
Pedunculopontine tegmental nucleus
nTPM: 43.5
2334 Male, age 80, both hemispheres 46.6
2338 Male, age 61, both hemispheres 46.2
1921 Female, age 85, both hemispheres 37.7
Periaquaductal grey, anterior
nTPM: 50.2
1795 Male, age 51, unknown 58.3
1947 Male, age 18, unknown 46.6
2502 Female, age 75, unknown 45.8
Periaquaductal grey, dorsal
nTPM: 49.0
1831 Male, age 72, unknown 53.5
2850 Male, age 76, both hemispheres 53.1
1840 Male, age 53, unknown 49.8
2464 Female, age 72, unknown 39.7
Periaquaductal grey, lateral
nTPM: 51.1
2272 Male, age 74, both hemispheres 55.1
2140 Male, age 76, both hemispheres 50.2
2053 Male, age 18, unknown 48.0
Pretectal area
nTPM: 60.0
1817 Female, age 42, unknown 80.2
1816 Male, age 51, unknown 79.6
1944 Female, age 72, unknown 71.7
1815 Male, age 53, unknown 66.9
2007 Male, age 72, unknown 62.2
2273 Male, age 74, both hemispheres 52.8
2667 Female, age 75, unknown 52.8
2224 Female, age 72, unknown 52.1
2407 Male, age 75, both hemispheres 52.1
2825 Male, age 18, unknown 45.8
2316 Male, age 76, right hemisphere 44.1
Red nucleus
nTPM: 42.5
2785 Male, age 18, unknown 53.2
2725 Female, age 75, unknown 49.5
2584 Male, age 75, left hemisphere 48.4
2503 Female, age 72, unknown 43.8
1865 Male, age 51, unknown 41.6
2588 Male, age 74, left hemisphere 41.3
1821 Female, age 72, unknown 39.4
2823 Male, age 76, right hemisphere 39.4
1954 Female, age 42, unknown 39.3
2227 Male, age 72, unknown 38.6
2769 Male, age 72, unknown 37.9
1904 Male, age 53, unknown 37.7
Substantia nigra
nTPM: 50.3
2583 Male, age 75, right hemisphere 60.9
1889 Female, age 72, unknown 58.1
1916 Female, age 42, unknown 51.4
2665 Male, age 74, both hemispheres 50.8
1851 Male, age 51, unknown 50.2
1941 Male, age 53, unknown 49.7
2590 Female, age 75, unknown 47.2
2241 Male, age 72, unknown 46.2
2699 Male, age 18, unknown 45.8
2409 Female, age 72, unknown 42.5
Superior colliculus
nTPM: 53.8
2664 Male, age 75, both hemispheres 65.2
2087 Female, age 72, unknown 64.3
2261 Male, age 18, unknown 58.5
2668 Female, age 75, unknown 58.0
1796 Male, age 53, unknown 55.3
1995 Male, age 72, unknown 54.5
1913 Female, age 42, unknown 51.7
2587 Male, age 74, left hemisphere 46.7
1839 Male, age 51, unknown 45.2
1895 Male, age 76, right hemisphere 38.4
Ventral tegmental area
nTPM: 48.8
2021 Male, age 53, unknown 53.4
2223 Female, age 72, unknown 53.3
2218 Male, age 76, both hemispheres 49.9
1915 Female, age 42, unknown 46.0
2410 Female, age 72, unknown 45.8
1942 Male, age 51, unknown 44.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 46.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 46.9
Samples: 139

Max nTPM: 81.1
Min nTPM: 21.3
Std nTPM: 9.5
Median nTPM: 46.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 81.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 81.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 72.0
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 68.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 67.2
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 65.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 65.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 63.1
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 62.8
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 61.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 59.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 78.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.2
FF:10158-103A5 76 years, female 78.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 98.1
Pig sample Sample description nTPM
Midbrain
nTPM: 98.1
Samples: 4

Max nTPM: 120.9
Min nTPM: 84.2
Sample A Female 97.2
Sample B Female 90.2
Sample C Male 120.9
Sample D Male 84.2
Periaqueductal gray
nTPM: 82.4
Samples: 3

Max nTPM: 90.6
Min nTPM: 72.7
Sample B Female 83.9
Sample C Male 90.6
Sample D Male 72.7
Substantia nigra
nTPM: 86.4
Samples: 4

Max nTPM: 99.5
Min nTPM: 66.1
Sample A Female 99.5
Sample B Female 90.5
Sample C Male 89.3
Sample D Male 66.1
Superior colliculi
nTPM: 95.5
Samples: 4

Max nTPM: 106.8
Min nTPM: 81.0
Sample A Female 96.1
Sample B Female 106.8
Sample C Male 98.0
Sample D Male 81.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 100.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.6
Samples: 4

Max nTPM: 105.6
Min nTPM: 97.6
Sample A Male 97.6
Sample B Male 100.4
Sample C Female 105.6
Sample D Female 98.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
2412 Antisense, RP_Baylor_102813, Mouse strain C57BL/6J (56 days, male) 7.5
2411 Antisense, RP_Baylor_102813, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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