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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:212.9 nTPM
HPA:212.9 nTPM
GTEx:213.6 nTPM
FANTOM5:238.2 Scaled Tags Per Million
Pig:163.3 nTPM
Mouse:575.6 nTPM
Allen mouse:14.6 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 212.9
Sample id Sample description nTPM
Amygdala
nTPM: 212.9
2514 Male, age 75, right hemisphere 242.9
2814 Male, age 76, right hemisphere 209.0
1987 Female, age 91, left hemisphere 205.9
2695 Female, age 67, right hemisphere 205.0
2517 Female, age 94, left hemisphere 201.8
Basal amygdala
nTPM: 197.4
2609 Male, age 75, right hemisphere 213.8
1955 Male, age 76, both hemispheres 204.4
2243 Female, age 91, right hemisphere 195.2
2685 Female, age 94, left hemisphere 191.4
2110 Male, age 80, left hemisphere 189.9
2827 Female, age 67, right hemisphere 189.5
Central amygdala
nTPM: 200.3
1905 Male, age 76, both hemispheres 212.0
2515 Male, age 75, right hemisphere 201.7
2239 Male, age 80, left hemisphere 199.3
2701 Female, age 91, right hemisphere 195.2
2826 Female, age 94, left hemisphere 193.3
Corticomedial amygdala
nTPM: 205.5
2428 Male, age 75, right hemisphere 218.2
2240 Male, age 76, both hemispheres 210.4
2429 Female, age 94, left hemisphere 210.0
2242 Female, age 91, right hemisphere 208.3
2829 Male, age 80, left hemisphere 196.6
2535 Female, age 67, right hemisphere 189.9
Lateral amygdala
nTPM: 198.1
2516 Male, age 75, right hemisphere 210.7
1883 Male, age 76, both hemispheres 207.6
2256 Male, age 80, left hemisphere 194.4
2255 Female, age 91, right hemisphere 192.7
2534 Female, age 94, left hemisphere 192.7
2830 Female, age 67, right hemisphere 190.6
Stria terminalis, bed nucleus
nTPM: 193.5
2486 Female, age 94, both hemispheres 195.0
1974 Female, age 91, both hemispheres 193.5
2201 Male, age 74, unknown 192.0

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 213.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 213.6
Samples: 152

Max nTPM: 543.4
Min nTPM: 58.8
Std nTPM: 86.8
Median nTPM: 204.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 543.4
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 534.5
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 496.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 474.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 460.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 412.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 409.8
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 393.6
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 346.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 346.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 339.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 330.6
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 317.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 315.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 308.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 303.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 299.5
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 297.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 297.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 293.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 287.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 285.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 283.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 283.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 282.3
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 281.7
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 281.4
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 281.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 278.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 277.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 272.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 270.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 270.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 269.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 269.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 264.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 263.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 258.5
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 253.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 253.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 252.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 251.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 250.8
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 249.8
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 247.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 243.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 240.8
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 239.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 236.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 234.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 233.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 233.0
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 232.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 231.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 231.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 230.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 230.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 230.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 222.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 219.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 218.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 217.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 217.0
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 216.9
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 216.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 215.7
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 213.4
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 211.8
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 209.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 208.9
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 207.8
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 207.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 205.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 205.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 205.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 205.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 203.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 201.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 197.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 195.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 194.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 191.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 189.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 189.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 187.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 186.4
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 186.2
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 186.0
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 181.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 180.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 179.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 179.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 179.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 179.2
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 178.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 177.5
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 177.1
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 176.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 172.6
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 171.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 171.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 169.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 168.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 167.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 166.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 165.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 163.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 161.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 159.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 158.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 156.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 156.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 153.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 150.6
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 149.3
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 147.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 147.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 146.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 144.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 144.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 143.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 143.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 143.2
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 143.0
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 142.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 140.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 139.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 139.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 138.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 135.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 132.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 128.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 128.2
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 128.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 124.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 123.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 123.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 122.4
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 120.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 119.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 112.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 109.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 108.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 106.3
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 100.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 98.1
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 94.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 94.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 83.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 75.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 63.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 58.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 238.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 238.2
FF:10151-102I7 76 years, female 238.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 163.3
Pig sample Sample description nTPM
Amygdala
nTPM: 163.3
Samples: 4

Max nTPM: 188.4
Min nTPM: 129.6
Sample A Female 166.5
Sample B Female 188.4
Sample C Male 168.6
Sample D Male 129.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 575.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 575.6
Samples: 4

Max nTPM: 606.4
Min nTPM: 498.2
Sample A Male 498.2
Sample B Male 592.3
Sample C Female 605.5
Sample D Female 606.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 14.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 14.6
77455034 Antisense, RP_070129_02_A05, Mouse strain C57BL/6J (56 days, male) 15.1
2508 Antisense, RP_040324_01_D06, Mouse strain C57BL/6J (56 days, male) 14.1
77866882 Antisense, RP_070129_02_A05, Mouse strain C57BL/6J (56 days, male) 14.0
2507 Antisense, RP_040324_01_D06, Mouse strain C57BL/6J (56 days, male) 11.8

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