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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:33.2 nTPM
HPA:33.2 nTPM
FANTOM5:86.4 Scaled Tags Per Million

PONS - HPA Brain RNA-seq
Max nTPM 33.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 33.2
1984 Male, age 76, both hemispheres 47.7
2188 Female, age 91, both hemispheres 32.6
2090 Male, age 80, both hemispheres 26.4
2301 Female, age 85, both hemispheres 26.2
Dorsal cochlear nucleus
nTPM: 23.1
2187 Female, age 91, both hemispheres 28.6
2378 Male, age 80, both hemispheres 24.4
2802 Male, age 74, right hemisphere 23.5
2058 Male, age 76, both hemispheres 19.8
2370 Male, age 61, both hemispheres 19.6
Dorsal tegmental nucleus
nTPM: 21.4
2083 Male, age 80, both hemispheres 25.5
2326 Male, age 74, both hemispheres 24.1
1936 Male, age 76, left hemisphere 19.4
2358 Male, age 61, both hemispheres 16.8
Dorsolateral tegmental area
nTPM: 22.1
2751 Female, age 85, both hemispheres 26.7
2654 Male, age 80, both hemispheres 24.8
2360 Male, age 74, both hemispheres 21.1
2337 Male, age 61, both hemispheres 20.2
2141 Male, age 76, both hemispheres 17.6
Kolliker-Fuse nucleus
nTPM: 24.6
2793 Female, age 91, left hemisphere 34.1
2163 Male, age 80, both hemispheres 21.3
2315 Male, age 76, right hemisphere 18.6
Lateral lemniscal nuclei
nTPM: 25.1
2320 Female, age 91, left hemisphere 31.9
2453 Male, age 74, right hemisphere 25.1
2746 Female, age 85, left hemisphere 24.6
2036 Male, age 80, both hemispheres 24.4
2169 Male, age 76, both hemispheres 19.3
Lateral parabrachial nucleus
nTPM: 25.0
2792 Male, age 76, both hemispheres 33.1
2013 Male, age 80, both hemispheres 27.9
2139 Female, age 85, right hemisphere 20.4
2790 Male, age 61, both hemispheres 18.5
Lateral vestibular nucleus
nTPM: 20.3
2311 Male, age 80, both hemispheres 20.9
2184 Male, age 76, both hemispheres 19.8
Locus coeruleus
nTPM: 16.8
2720 Male, age 74, both hemispheres 20.3
2162 Male, age 80, both hemispheres 18.1
2317 Female, age 72, unknown 17.4
2788 Male, age 74, unknown 16.2
2123 Female, age 91, both hemispheres 15.9
2014 Male, age 55, unknown 14.9
1980 Male, age 76, both hemispheres 14.7
Medial olivary nucleus
nTPM: 31.2
1943 Male, age 61, both hemispheres 40.7
1962 Male, age 76, both hemispheres 32.5
2138 Female, age 91, both hemispheres 27.0
2851 Male, age 80, both hemispheres 24.5
Medial parabrachial nucleus
nTPM: 25.6
2463 Female, age 85, right hemisphere 34.9
2170 Female, age 91, both hemispheres 29.1
2854 Male, age 80, both hemispheres 24.6
2786 Male, age 76, both hemispheres 22.3
2156 Male, age 61, both hemispheres 17.0
Medial periolivary nuclei
nTPM: 24.5
2458 Female, age 91, both hemispheres 29.0
2791 Male, age 74, right hemisphere 28.4
2081 Male, age 80, both hemispheres 28.1
2171 Female, age 85, both hemispheres 18.7
2063 Male, age 76, both hemispheres 18.4
Motor facial nucleus
nTPM: 23.7
2365 Male, age 74, right hemisphere 30.4
2697 Female, age 85, both hemispheres 26.7
2126 Male, age 61, both hemispheres 25.5
2795 Female, age 91, both hemispheres 22.8
2327 Male, age 80, both hemispheres 20.0
2062 Male, age 76, both hemispheres 16.7
Motor trigeminal nucleus
nTPM: 24.1
2560 Male, age 74, both hemispheres 29.3
2321 Female, age 91, both hemispheres 27.6
2079 Male, age 80, both hemispheres 22.2
2309 Male, age 76, both hemispheres 22.0
2335 Male, age 61, both hemispheres 19.4
Nuclei of the trapezoid body
nTPM: 21.7
2368 Female, age 91, both hemispheres 26.5
2166 Male, age 80, both hemispheres 25.1
2159 Male, age 61, both hemispheres 22.4
1983 Male, age 76, both hemispheres 17.6
2735 Female, age 85, both hemispheres 16.8
Paramedian reticular nucleus
nTPM: 24.2
2052 Male, age 76, both hemispheres 29.8
2057 Male, age 80, both hemispheres 23.3
2050 Female, age 85, both hemispheres 22.4
2313 Male, age 61, both hemispheres 21.1
Pontine nuclei
nTPM: 26.3
2454 Male, age 74, left hemisphere 37.6
2319 Female, age 91, both hemispheres 31.6
2115 Male, age 80, left hemisphere 26.7
2109 Female, age 72, unknown 26.4
2727 Male, age 61, right hemisphere 23.5
1863 Male, age 55, unknown 23.3
1968 Male, age 76, left hemisphere 21.6
2787 Female, age 85, both hemispheres 19.8
Pontine raphe nucleus
nTPM: 19.4
2122 Female, age 85, midline 19.9
2853 Male, age 76, midline 19.0
Posteroventral cochlear nucleus
nTPM: 27.2
2135 Female, age 91, both hemispheres 37.0
2341 Male, age 80, both hemispheres 28.6
2070 Male, age 76, both hemispheres 27.0
2752 Female, age 85, both hemispheres 22.4
2371 Male, age 61, both hemispheres 21.2
Principal sensory trigeminal nucleus
nTPM: 22.5
2367 Female, age 91, left hemisphere 34.4
2008 Male, age 80, left hemisphere 21.1
2324 Male, age 76, both hemispheres 17.9
2158 Male, age 61, both hemispheres 16.5
Reticular pontine nucleus, caudal
nTPM: 26.8
2457 Female, age 91, both hemispheres 32.0
2559 Male, age 74, both hemispheres 31.8
2092 Male, age 76, both hemispheres 23.1
2332 Male, age 80, right hemisphere 20.3
Reticular pontine nucleus, oral
nTPM: 29.6
2361 Male, age 74, both hemispheres 38.5
2366 Female, age 91, both hemispheres 33.9
1939 Male, age 80, both hemispheres 26.0
2012 Female, age 85, both hemispheres 25.2
2167 Male, age 76, both hemispheres 24.2
Reticulotegmental nucleus
nTPM: 22.1
2322 Female, age 91, both hemispheres 25.8
2452 Male, age 74, both hemispheres 23.0
2333 Male, age 80, both hemispheres 22.1
2325 Male, age 76, both hemispheres 17.3
Spinal trigeminal nucleus, oral
nTPM: 24.1
2737 Female, age 85, both hemispheres 27.9
2164 Male, age 80, both hemispheres 22.6
1978 Male, age 76, both hemispheres 21.7
Subcoeruleus area
nTPM: 23.4
2369 Female, age 85, left hemisphere 31.0
2089 Male, age 76, left hemisphere 22.5
1958 Male, age 80, both hemispheres 21.7
2323 Female, age 91, left hemisphere 21.1
2451 Male, age 74, both hemispheres 20.7
Superior olive
nTPM: 26.1
2364 Male, age 74, right hemisphere 28.8
2561 Female, age 91, both hemispheres 26.9
2020 Male, age 76, both hemispheres 26.6
2329 Male, age 80, right hemisphere 24.8
1875 Female, age 85, both hemispheres 23.6
Superior vestibular nucleus
nTPM: 20.5
2383 Male, age 74, both hemispheres 22.5
2015 Male, age 80, both hemispheres 21.0
2061 Male, age 76, both hemispheres 17.9
Ventral periolivary nuclei
nTPM: 22.2
2023 Male, age 76, both hemispheres 29.3
2794 Female, age 91, left hemisphere 22.2
2165 Male, age 80, both hemispheres 20.5
2130 Female, age 85, both hemispheres 16.9
Ventrolateral tegmental area, A5 NE cell group
nTPM: 25.0
2456 Female, age 91, both hemispheres 30.4
2449 Male, age 74, both hemispheres 26.8
2840 Female, age 85, both hemispheres 25.5
1959 Male, age 76, both hemispheres 24.5
2161 Male, age 80, both hemispheres 22.8
2359 Male, age 61, both hemispheres 20.3

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 86.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 86.4
FF:10165-103B3 76 years, female 103.0
FF:10182-103D2 60 years, female 69.8
Pons
Scaled Tags Per Million: 74.5
FF:10033-101E6 18-54 years, mixed 74.5

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