MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:51.9 nTPM
HPA:51.9 nTPM
GTEx:32.2 nTPM
FANTOM5:14.9 Scaled Tags Per Million
Pig:73.3 nTPM
Mouse:239.7 nTPM
Allen mouse:5.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 51.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 46.6
2666 Male, age 74, left hemisphere 55.9
2586 Male, age 75, left hemisphere 53.8
1827 Male, age 72, unknown 50.5
2019 Male, age 18, unknown 48.5
2828 Female, age 72, unknown 46.0
2411 Female, age 72, unknown 44.4
1870 Female, age 42, unknown 43.8
2219 Male, age 76, both hemispheres 42.3
1830 Male, age 51, unknown 41.0
1833 Male, age 53, unknown 40.4
Dorsal raphe nucleus
nTPM: 43.3
1828 Male, age 53, unknown 45.7
2298 Female, age 72, unknown 45.0
2750 Male, age 76, both hemispheres 43.9
2047 Male, age 72, unknown 42.6
2016 Female, age 72, unknown 39.4
Inferior colliculus
nTPM: 44.1
2097 Female, age 72, unknown 48.8
1890 Male, age 53, unknown 44.6
1848 Female, age 42, unknown 42.0
2849 Male, age 72, unknown 40.8
Median raphe nucleus
nTPM: 44.3
2220 Male, age 76, midline 44.3
Pedunculopontine tegmental nucleus
nTPM: 43.6
2338 Male, age 61, both hemispheres 44.4
1921 Female, age 85, both hemispheres 43.3
2334 Male, age 80, both hemispheres 43.0
Periaquaductal grey, anterior
nTPM: 46.6
1795 Male, age 51, unknown 52.6
2502 Female, age 75, unknown 44.2
1947 Male, age 18, unknown 42.9
Periaquaductal grey, dorsal
nTPM: 42.7
1831 Male, age 72, unknown 48.5
1840 Male, age 53, unknown 41.3
2464 Female, age 72, unknown 41.1
2850 Male, age 76, both hemispheres 39.9
Periaquaductal grey, lateral
nTPM: 42.2
2053 Male, age 18, unknown 46.1
2272 Male, age 74, both hemispheres 42.0
2140 Male, age 76, both hemispheres 38.4
Pretectal area
nTPM: 51.9
1816 Male, age 51, unknown 71.9
2007 Male, age 72, unknown 61.6
1944 Female, age 72, unknown 60.6
1817 Female, age 42, unknown 58.2
1815 Male, age 53, unknown 57.8
2407 Male, age 75, both hemispheres 47.6
2667 Female, age 75, unknown 46.2
2825 Male, age 18, unknown 43.4
2224 Female, age 72, unknown 42.6
2273 Male, age 74, both hemispheres 42.3
2316 Male, age 76, right hemisphere 38.8
Red nucleus
nTPM: 43.8
2584 Male, age 75, left hemisphere 51.6
2785 Male, age 18, unknown 49.6
2588 Male, age 74, left hemisphere 45.2
1821 Female, age 72, unknown 43.6
2725 Female, age 75, unknown 43.3
1865 Male, age 51, unknown 42.5
1954 Female, age 42, unknown 42.1
2503 Female, age 72, unknown 41.9
2769 Male, age 72, unknown 41.7
2823 Male, age 76, right hemisphere 41.7
1904 Male, age 53, unknown 41.6
2227 Male, age 72, unknown 40.8
Substantia nigra
nTPM: 46.5
1889 Female, age 72, unknown 54.2
2583 Male, age 75, right hemisphere 51.3
2665 Male, age 74, both hemispheres 49.2
1941 Male, age 53, unknown 48.5
2409 Female, age 72, unknown 46.7
1916 Female, age 42, unknown 46.3
1851 Male, age 51, unknown 45.9
2590 Female, age 75, unknown 43.1
2241 Male, age 72, unknown 39.7
2699 Male, age 18, unknown 39.7
Superior colliculus
nTPM: 49.0
2668 Female, age 75, unknown 60.8
2261 Male, age 18, unknown 53.2
2087 Female, age 72, unknown 51.7
1796 Male, age 53, unknown 51.2
1913 Female, age 42, unknown 50.3
1995 Male, age 72, unknown 47.9
2664 Male, age 75, both hemispheres 47.8
2587 Male, age 74, left hemisphere 43.9
1895 Male, age 76, right hemisphere 42.3
1839 Male, age 51, unknown 41.3
Ventral tegmental area
nTPM: 45.2
2223 Female, age 72, unknown 50.2
2410 Female, age 72, unknown 47.3
1915 Female, age 42, unknown 45.6
2218 Male, age 76, both hemispheres 43.8
1942 Male, age 51, unknown 42.4
2021 Male, age 53, unknown 41.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 32.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 32.2
Samples: 139

Max nTPM: 70.0
Min nTPM: 14.2
Std nTPM: 9.9
Median nTPM: 30.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 70.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 68.9
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 64.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 61.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 60.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 50.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 49.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 48.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 47.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 47.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 46.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 14.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 14.9
FF:10158-103A5 76 years, female 14.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 73.3
Pig sample Sample description nTPM
Midbrain
nTPM: 73.3
Samples: 4

Max nTPM: 147.3
Min nTPM: 40.1
Sample A Female 40.1
Sample B Female 41.6
Sample C Male 147.3
Sample D Male 64.3
Periaqueductal gray
nTPM: 35.3
Samples: 3

Max nTPM: 40.7
Min nTPM: 31.9
Sample B Female 33.4
Sample C Male 40.7
Sample D Male 31.9
Substantia nigra
nTPM: 43.7
Samples: 4

Max nTPM: 61.4
Min nTPM: 29.8
Sample A Female 61.4
Sample B Female 35.0
Sample C Male 48.5
Sample D Male 29.8
Superior colliculi
nTPM: 62.6
Samples: 4

Max nTPM: 86.0
Min nTPM: 40.9
Sample A Female 70.2
Sample B Female 40.9
Sample C Male 86.0
Sample D Male 53.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 239.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 239.7
Samples: 4

Max nTPM: 247.3
Min nTPM: 232.7
Sample A Male 247.3
Sample B Male 232.7
Sample C Female 242.9
Sample D Female 235.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.9
69526707 Antisense, RP_050421_01_E01, Mouse strain C57BL/6J (56 days, male) 5.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.