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TISSUE SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:185.9 nTPM
HPA:61.4 nTPM
GTEx:185.9 nTPM
FANTOM5:29.2 Scaled Tags Per Million

SMALL INTESTINE - Annotated protein expression
Pending normal tissue analysis

SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 61.4
overview
Male, age 65
Small intestine sample 232
nTPM: 44.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 77
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 61.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 61.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 185.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 185.9
Samples: 187

Max nTPM: 935.9
Min nTPM: 43.2
Std nTPM: 128.7
Median nTPM: 153.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 935.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 767.6
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 571.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 494.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 489.1
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 480.4
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 469.2
GTEX-1192X-2526-SM-59868 50-59 years, male 466.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 427.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 421.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 413.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 409.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 390.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 374.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 364.7
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 360.2
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 358.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 357.0
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 333.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 330.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 326.7
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 322.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 320.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 317.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 316.0
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 311.3
GTEX-13111-1426-SM-5DUW3 50-59 years, male 308.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 290.5
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 289.4
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 288.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 287.6
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 285.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 281.3
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 280.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 280.1
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 279.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 279.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 277.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 273.6
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 269.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 268.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 264.5
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 262.0
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 261.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 256.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 251.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 249.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 245.8
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 241.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 239.1
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 236.0
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 233.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 225.3
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 221.6
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 217.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 217.9
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 214.9
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 212.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 212.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 211.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 207.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 206.2
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 205.6
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 205.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 204.4
GTEX-183FY-1626-SM-793D8 20-29 years, male 203.9
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 200.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 199.4
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 195.7
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 195.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 191.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 191.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 188.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 182.6
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 179.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 177.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 175.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 174.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 172.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 172.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 171.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 170.9
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 169.4
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 168.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 168.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 166.8
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 166.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 164.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 161.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 160.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 158.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 157.9
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 156.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 153.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 151.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 150.7
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 147.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 143.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 143.1
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 134.3
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 129.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 128.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 127.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 126.6
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 126.4
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 126.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 126.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 123.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 122.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 122.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 122.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 122.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 121.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 120.4
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 119.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 119.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 119.5
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 118.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 117.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 117.0
GTEX-13O61-1326-SM-5KM31 60-69 years, male 114.5
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 113.8
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 112.5
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 112.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 111.9
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 111.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 109.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 109.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 108.9
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 107.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 106.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 104.8
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 102.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 102.3
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 101.4
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 100.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 100.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 98.5
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 98.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 98.3
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 96.8
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 95.0
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 93.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 92.3
GTEX-14PKU-1626-SM-6871C 40-49 years, female 92.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 92.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 89.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 88.0
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 86.7
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 85.8
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 85.2
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 84.6
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 82.9
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 79.8
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 78.6
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 77.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 76.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 76.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 75.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 73.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 73.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 73.0
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 72.0
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 69.7
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 68.8
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 68.5
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 68.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 67.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 67.4
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 67.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 66.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 65.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 65.5
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 65.0
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 62.6
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 59.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 57.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 57.4
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 55.6
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 51.3
GTEX-1122O-1326-SM-5H11F 60-69 years, female 50.7
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 50.7
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 49.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 49.3
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 47.2
GTEX-111YS-1426-SM-5GID8 60-69 years, male 43.9
GTEX-14PN3-2026-SM-68729 60-69 years, female 43.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 29.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 29.2
FF:10024-101D6 15,40,85 years, mixed 29.2

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