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AGR2
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: High
Enterocytes: High
Enterocytes - Microvilli: Not detected
Goblet cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:379.2 nTPM
HPA:379.2 nTPM
GTEx:202.1 nTPM
FANTOM5:615.5 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA007912
Endocrine cells High
Enterocytes High
Enterocytes - Microvilli Not detected
Goblet cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 379.2
overview
Male, age 65
Small intestine sample 232
nTPM: 312.4
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 438.4
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 419.5
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 346.4

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 202.1
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 202.1
Samples: 187

Max nTPM: 1282.5
Min nTPM: 0.0
Std nTPM: 233.5
Median nTPM: 128.3
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 1282.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 1176.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 976.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 963.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 958.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 795.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 791.4
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 721.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 696.3
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 690.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 680.4
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 676.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 642.7
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 599.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 598.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 568.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 549.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 529.4
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 522.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 483.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 453.9
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 447.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 442.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 435.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 413.9
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 393.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 391.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 390.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 388.0
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 384.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 379.5
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 371.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 358.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 358.2
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 354.7
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 353.9
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 343.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 343.2
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 342.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 323.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 313.0
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 307.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 305.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 302.2
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 294.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 284.7
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 277.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 276.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 269.6
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 266.1
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 260.0
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 258.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 253.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 251.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 246.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 245.5
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 230.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 229.1
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 227.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 221.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 220.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 219.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 217.7
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 215.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 214.3
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 210.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 208.8
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 207.6
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 207.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 207.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 196.7
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 196.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 194.9
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 194.2
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 188.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 185.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 180.1
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 173.8
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 173.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 172.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 164.2
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 158.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 154.4
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 153.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 152.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 152.0
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 149.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 149.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 144.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 140.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 130.2
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 129.3
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 128.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 128.3
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 127.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 127.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 125.8
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 114.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 110.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 109.7
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 109.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 109.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 108.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 106.9
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 105.8
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 97.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 94.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 93.2
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 92.5
GTEX-ZTSS-0926-SM-59865 40-49 years, male 91.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 89.6
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 88.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 88.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 85.4
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 82.8
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 79.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 77.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 77.4
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 74.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 70.7
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 66.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 64.6
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 64.4
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 57.4
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 57.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 56.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 55.9
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 54.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 52.4
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 52.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 49.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 48.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 46.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 40.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 40.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 37.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 36.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 36.2
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 36.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 31.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 28.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 27.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 24.3
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 24.0
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 23.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 21.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 20.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 18.1
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 14.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 12.8
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 12.7
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 11.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 10.8
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 9.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 8.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 8.2
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 7.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 7.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 7.4
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 6.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 6.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 5.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 4.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4.2
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 3.8
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 3.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 3.3
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 2.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 2.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 1.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 1.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 1.5
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 1.4
GTEX-1192X-2526-SM-59868 50-59 years, male 1.3
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 1.3
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 0.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 0.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 0.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 0.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 0.1
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 0.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 615.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 615.5
FF:10024-101D6 15,40,85 years, mixed 615.5

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