MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.5 nTPM
HPA:54.5 nTPM
GTEx:74.2 nTPM
FANTOM5:36.6 Scaled Tags Per Million
Mouse:83.1 nTPM
Allen mouse:9.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.1
1870 Female, age 42, unknown 54.0
2019 Male, age 18, unknown 53.2
1827 Male, age 72, unknown 52.8
2411 Female, age 72, unknown 52.7
2828 Female, age 72, unknown 52.2
1833 Male, age 53, unknown 52.1
2666 Male, age 74, left hemisphere 52.1
1830 Male, age 51, unknown 51.5
2586 Male, age 75, left hemisphere 50.4
2219 Male, age 76, both hemispheres 50.3
Dorsal raphe nucleus
nTPM: 54.5
2298 Female, age 72, unknown 60.1
2016 Female, age 72, unknown 53.6
1828 Male, age 53, unknown 53.4
2047 Male, age 72, unknown 52.8
2750 Male, age 76, both hemispheres 52.5
Inferior colliculus
nTPM: 53.0
2097 Female, age 72, unknown 56.4
1890 Male, age 53, unknown 52.8
1848 Female, age 42, unknown 52.7
2849 Male, age 72, unknown 50.0
Median raphe nucleus
nTPM: 52.3
2220 Male, age 76, midline 52.3
Pedunculopontine tegmental nucleus
nTPM: 53.7
1921 Female, age 85, both hemispheres 54.1
2338 Male, age 61, both hemispheres 53.6
2334 Male, age 80, both hemispheres 53.4
Periaquaductal grey, anterior
nTPM: 53.0
1947 Male, age 18, unknown 54.4
2502 Female, age 75, unknown 53.2
1795 Male, age 51, unknown 51.5
Periaquaductal grey, dorsal
nTPM: 52.6
1831 Male, age 72, unknown 53.5
1840 Male, age 53, unknown 53.1
2464 Female, age 72, unknown 52.4
2850 Male, age 76, both hemispheres 51.2
Periaquaductal grey, lateral
nTPM: 51.9
2272 Male, age 74, both hemispheres 52.6
2053 Male, age 18, unknown 52.2
2140 Male, age 76, both hemispheres 51.0
Pretectal area
nTPM: 53.1
2273 Male, age 74, both hemispheres 54.7
2007 Male, age 72, unknown 54.1
1816 Male, age 51, unknown 54.0
2224 Female, age 72, unknown 53.8
1944 Female, age 72, unknown 53.7
1817 Female, age 42, unknown 53.3
2667 Female, age 75, unknown 52.9
2316 Male, age 76, right hemisphere 52.8
1815 Male, age 53, unknown 52.6
2825 Male, age 18, unknown 51.4
2407 Male, age 75, both hemispheres 50.9
Red nucleus
nTPM: 53.3
1821 Female, age 72, unknown 58.1
1904 Male, age 53, unknown 54.2
2503 Female, age 72, unknown 54.1
1865 Male, age 51, unknown 53.9
1954 Female, age 42, unknown 53.7
2227 Male, age 72, unknown 53.3
2823 Male, age 76, right hemisphere 53.3
2785 Male, age 18, unknown 53.2
2769 Male, age 72, unknown 52.9
2725 Female, age 75, unknown 52.4
2584 Male, age 75, left hemisphere 50.2
2588 Male, age 74, left hemisphere 49.6
Substantia nigra
nTPM: 53.5
2241 Male, age 72, unknown 56.7
1851 Male, age 51, unknown 55.4
1916 Female, age 42, unknown 55.1
1941 Male, age 53, unknown 54.2
1889 Female, age 72, unknown 53.8
2409 Female, age 72, unknown 53.3
2590 Female, age 75, unknown 52.3
2583 Male, age 75, right hemisphere 51.6
2699 Male, age 18, unknown 51.5
2665 Male, age 74, both hemispheres 50.8
Superior colliculus
nTPM: 52.6
2587 Male, age 74, left hemisphere 54.2
2668 Female, age 75, unknown 53.8
1895 Male, age 76, right hemisphere 52.9
2261 Male, age 18, unknown 52.9
1913 Female, age 42, unknown 52.7
1796 Male, age 53, unknown 52.6
2087 Female, age 72, unknown 52.1
2664 Male, age 75, both hemispheres 52.0
1995 Male, age 72, unknown 51.7
1839 Male, age 51, unknown 50.9
Ventral tegmental area
nTPM: 52.8
1915 Female, age 42, unknown 54.6
1942 Male, age 51, unknown 53.3
2218 Male, age 76, both hemispheres 52.9
2223 Female, age 72, unknown 52.8
2410 Female, age 72, unknown 52.0
2021 Male, age 53, unknown 51.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 74.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 74.2
Samples: 139

Max nTPM: 129.0
Min nTPM: 45.8
Std nTPM: 17.4
Median nTPM: 70.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 129.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 128.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 125.3
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 123.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 123.2
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 117.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 114.2
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 113.3
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 111.8
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 109.7
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 103.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.6
FF:10158-103A5 76 years, female 36.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 83.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 83.1
Samples: 4

Max nTPM: 87.6
Min nTPM: 77.6
Sample A Male 87.6
Sample B Male 83.6
Sample C Female 77.6
Sample D Female 83.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.8
68797492 Antisense, RP_050125_02_D06, Mouse strain C57BL/6J (56 days, male) 9.8

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