MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:129.1 nTPM
HPA:129.1 nTPM
GTEx:142.0 nTPM
FANTOM5:7.5 Scaled Tags Per Million
Pig:77.4 nTPM
Mouse:107.1 nTPM
Allen mouse:3.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 129.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 117.4
1827 Male, age 72, unknown 123.1
2019 Male, age 18, unknown 123.0
2586 Male, age 75, left hemisphere 122.5
2666 Male, age 74, left hemisphere 119.1
1870 Female, age 42, unknown 116.5
2411 Female, age 72, unknown 116.1
1833 Male, age 53, unknown 114.5
2828 Female, age 72, unknown 114.0
2219 Male, age 76, both hemispheres 112.7
1830 Male, age 51, unknown 112.4
Dorsal raphe nucleus
nTPM: 118.5
2298 Female, age 72, unknown 122.5
1828 Male, age 53, unknown 121.5
2047 Male, age 72, unknown 118.1
2016 Female, age 72, unknown 115.7
2750 Male, age 76, both hemispheres 114.7
Inferior colliculus
nTPM: 117.9
2097 Female, age 72, unknown 123.4
1890 Male, age 53, unknown 118.2
1848 Female, age 42, unknown 116.5
2849 Male, age 72, unknown 113.6
Median raphe nucleus
nTPM: 116.0
2220 Male, age 76, midline 116.0
Pedunculopontine tegmental nucleus
nTPM: 121.8
1921 Female, age 85, both hemispheres 125.5
2334 Male, age 80, both hemispheres 124.5
2338 Male, age 61, both hemispheres 115.5
Periaquaductal grey, anterior
nTPM: 120.9
1947 Male, age 18, unknown 122.9
1795 Male, age 51, unknown 120.9
2502 Female, age 75, unknown 118.7
Periaquaductal grey, dorsal
nTPM: 117.3
2850 Male, age 76, both hemispheres 122.1
1840 Male, age 53, unknown 117.1
1831 Male, age 72, unknown 116.2
2464 Female, age 72, unknown 113.6
Periaquaductal grey, lateral
nTPM: 118.0
2053 Male, age 18, unknown 119.5
2140 Male, age 76, both hemispheres 119.3
2272 Male, age 74, both hemispheres 115.3
Pretectal area
nTPM: 126.0
1816 Male, age 51, unknown 137.8
1944 Female, age 72, unknown 136.1
1817 Female, age 42, unknown 133.1
1815 Male, age 53, unknown 130.0
2007 Male, age 72, unknown 127.0
2667 Female, age 75, unknown 124.8
2273 Male, age 74, both hemispheres 124.4
2224 Female, age 72, unknown 124.1
2316 Male, age 76, right hemisphere 117.6
2407 Male, age 75, both hemispheres 115.7
2825 Male, age 18, unknown 115.5
Red nucleus
nTPM: 116.5
1821 Female, age 72, unknown 131.7
2725 Female, age 75, unknown 121.7
2785 Male, age 18, unknown 118.9
2823 Male, age 76, right hemisphere 117.0
1954 Female, age 42, unknown 116.7
1865 Male, age 51, unknown 115.5
2584 Male, age 75, left hemisphere 114.5
1904 Male, age 53, unknown 114.2
2227 Male, age 72, unknown 113.7
2503 Female, age 72, unknown 112.9
2769 Male, age 72, unknown 110.8
2588 Male, age 74, left hemisphere 110.4
Substantia nigra
nTPM: 129.1
2241 Male, age 72, unknown 144.5
1916 Female, age 42, unknown 138.0
2409 Female, age 72, unknown 134.9
1851 Male, age 51, unknown 133.5
1889 Female, age 72, unknown 130.7
1941 Male, age 53, unknown 129.6
2699 Male, age 18, unknown 121.0
2590 Female, age 75, unknown 120.5
2583 Male, age 75, right hemisphere 119.7
2665 Male, age 74, both hemispheres 119.0
Superior colliculus
nTPM: 119.6
2087 Female, age 72, unknown 126.2
2261 Male, age 18, unknown 123.4
2668 Female, age 75, unknown 123.2
2587 Male, age 74, left hemisphere 121.3
1796 Male, age 53, unknown 118.4
1913 Female, age 42, unknown 117.7
1895 Male, age 76, right hemisphere 117.6
2664 Male, age 75, both hemispheres 117.0
1995 Male, age 72, unknown 116.6
1839 Male, age 51, unknown 114.7
Ventral tegmental area
nTPM: 119.7
1915 Female, age 42, unknown 125.8
2410 Female, age 72, unknown 122.4
2218 Male, age 76, both hemispheres 121.6
1942 Male, age 51, unknown 117.7
2021 Male, age 53, unknown 117.2
2223 Female, age 72, unknown 113.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 142.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 142.0
Samples: 139

Max nTPM: 264.1
Min nTPM: 70.0
Std nTPM: 37.1
Median nTPM: 137.5
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 264.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 241.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 237.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 236.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 234.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 223.1
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 220.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 217.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 209.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 207.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 206.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 7.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 7.5
FF:10158-103A5 76 years, female 7.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 77.4
Pig sample Sample description nTPM
Midbrain
nTPM: 69.4
Samples: 4

Max nTPM: 82.4
Min nTPM: 56.8
Sample A Female 68.5
Sample B Female 56.8
Sample C Male 82.4
Sample D Male 69.7
Periaqueductal gray
nTPM: 52.2
Samples: 3

Max nTPM: 57.9
Min nTPM: 45.4
Sample B Female 45.4
Sample C Male 57.9
Sample D Male 53.4
Substantia nigra
nTPM: 64.0
Samples: 4

Max nTPM: 83.0
Min nTPM: 49.8
Sample A Female 83.0
Sample B Female 59.4
Sample C Male 63.6
Sample D Male 49.8
Superior colliculi
nTPM: 77.4
Samples: 4

Max nTPM: 85.7
Min nTPM: 70.3
Sample A Female 85.7
Sample B Female 70.3
Sample C Male 81.3
Sample D Male 72.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 107.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 107.1
Samples: 4

Max nTPM: 109.5
Min nTPM: 104.5
Sample A Male 105.5
Sample B Male 109.5
Sample C Female 104.5
Sample D Female 108.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.5
564750 Antisense, RP_040826_01_C05, Mouse strain C57BL/6J (56 days, male) 3.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.