BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:78.1 nTPM
HPA:78.1 nTPM
GTEx:60.9 nTPM
FANTOM5:53.1 Scaled Tags Per Million
Pig:40.3 nTPM
Mouse:24.5 nTPM
Allen mouse:0.2 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 78.1
Sample id Sample description nTPM
Caudate nucleus
nTPM: 72.0
2481 Female, age 94, left hemisphere 86.2
2289 Male, age 61, right hemisphere 81.3
2288 Male, age 75, left hemisphere 74.1
1781 Male, age 74, unknown 69.9
2290 Female, age 72, unknown 69.5
1857 Female, age 85, left hemisphere 69.3
1854 Male, age 80, left hemisphere 65.2
2846 Female, age 79, unknown 60.6
Claustrum
nTPM: 67.9
2645 Female, age 72, unknown 73.2
2491 Male, age 75, both hemispheres 73.0
2568 Male, age 61, both hemispheres 72.0
2198 Male, age 80, both hemispheres 70.1
1956 Male, age 74, unknown 69.0
2284 Female, age 91, both hemispheres 68.5
2392 Female, age 94, both hemispheres 63.4
2196 Female, age 79, unknown 62.2
2292 Female, age 85, both hemispheres 59.6
Globus pallidus, externus
nTPM: 51.9
2646 Male, age 61, right hemisphere 59.0
2395 Male, age 75, both hemispheres 51.5
2772 Female, age 79, unknown 50.4
2567 Female, age 72, unknown 49.5
1996 Male, age 80, right hemisphere 49.0
Globus pallidus, internus
nTPM: 50.5
2483 Female, age 94, right hemisphere 60.2
2566 Female, age 72, unknown 49.7
2778 Female, age 91, both hemispheres 49.1
2111 Female, age 85, right hemisphere 48.9
1818 Male, age 74, unknown 48.5
2287 Male, age 75, right hemisphere 48.4
2037 Male, age 80, right hemisphere 48.3
Nucleus accumbens
nTPM: 66.9
2286 Male, age 75, left hemisphere 81.5
2824 Male, age 61, right hemisphere 74.4
1806 Female, age 85, left hemisphere 71.9
2391 Female, age 94, left hemisphere 67.2
1783 Male, age 74, unknown 65.7
1856 Female, age 91, right hemisphere 61.4
2698 Female, age 72, unknown 57.1
2732 Male, age 80, right hemisphere 56.0
Nucleus basalis of Meynert
nTPM: 60.5
2484 Female, age 94, left hemisphere 66.1
2569 Male, age 61, both hemispheres 64.2
2393 Male, age 80, right hemisphere 57.1
2821 Male, age 75, both hemispheres 54.7
Nucleus of the diagonal band
nTPM: 76.0
2195 Female, age 85, both hemispheres 83.7
2775 Male, age 80, right hemisphere 79.5
2029 Male, age 61, right hemisphere 78.3
1812 Female, age 91, both hemispheres 71.4
1979 Male, age 74, unknown 67.2
Olfactory tubercle
nTPM: 77.5
2856 Male, age 75, right hemisphere 85.0
1846 Male, age 80, right hemisphere 79.4
1998 Female, age 91, both hemispheres 73.1
2487 Female, age 94, left hemisphere 72.7
Putamen
nTPM: 67.7
2647 Male, age 75, left hemisphere 81.8
2482 Female, age 94, left hemisphere 74.4
2489 Female, age 72, unknown 68.7
1937 Female, age 91, right hemisphere 63.6
2466 Female, age 79, unknown 63.4
1829 Male, age 74, unknown 61.6
1838 Male, age 80, right hemisphere 60.3
Septal nuclei
nTPM: 78.1
1960 Male, age 74, unknown 108.0
2059 Female, age 85, both hemispheres 85.6
2031 Female, age 72, unknown 81.6
2009 Female, age 91, both hemispheres 74.0
2629 Female, age 94, right hemisphere 73.0
2199 Male, age 80, right hemisphere 63.2
2394 Male, age 61, left hemisphere 61.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 60.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 55.8
Samples: 246

Max nTPM: 180.0
Min nTPM: 0.7
Std nTPM: 29.7
Median nTPM: 49.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 180.0
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 165.4
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 156.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 146.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 143.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 143.2
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 134.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 133.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 132.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 130.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 126.5
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.7
Samples: 246

Max nTPM: 145.2
Min nTPM: 1.3
Std nTPM: 24.7
Median nTPM: 37.9
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 145.2
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 140.3
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 138.6
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 124.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 123.3
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 119.4
GTEX-1LB8K-0011-R6a-SM-EXURT 50-59 years, male 114.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 109.5
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 98.2
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 95.5
GTEX-13PDP-0011-R6b-SM-5O9D5 60-69 years, male 93.2
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Brain - Putamen (basal ganglia)
Average nTPM: 60.9
Samples: 205

Max nTPM: 184.6
Min nTPM: 6.3
Std nTPM: 32.0
Median nTPM: 54.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 184.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 164.1
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 161.1
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 145.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 142.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 135.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 131.5
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 131.1
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 120.2
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 118.9
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 118.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 53.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 39.6
FF:10164-103B2 76 years, female 39.6
Globus pallidus
Scaled Tags Per Million: 13.6
FF:10175-103C4 60 years, female 18.9
FF:10161-103A8 76 years, female 8.3
Nucleus accumbens
Scaled Tags Per Million: 41.4
FF:10037-101F1 23-56 years, mixed 41.4
Putamen
Scaled Tags Per Million: 53.1
FF:10176-103C5 60 years, female 53.1

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 40.3
Pig sample Sample description nTPM
Caudate
nTPM: 40.3
Samples: 4

Max nTPM: 51.6
Min nTPM: 25.9
Sample A Female 25.9
Sample B Female 45.5
Sample C Male 51.6
Sample D Male 38.2
Putamen
nTPM: 31.2
Samples: 4

Max nTPM: 43.0
Min nTPM: 8.8
Sample A Female 8.8
Sample B Female 37.2
Sample C Male 43.0
Sample D Male 35.9
Septum
nTPM: 26.9
Samples: 4

Max nTPM: 40.8
Min nTPM: 5.2
Sample A Female 24.9
Sample B Female 36.7
Sample C Male 5.2
Sample D Male 40.8
Ventral pallidum
nTPM: 27.7
Samples: 4

Max nTPM: 37.9
Min nTPM: 8.8
Sample A Female 37.9
Sample B Female 35.6
Sample C Male 8.8
Sample D Male 28.4

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 24.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 17.7
Samples: 4

Max nTPM: 21.1
Min nTPM: 13.9
Sample A Male 13.9
Sample B Male 19.7
Sample C Female 16.2
Sample D Female 21.1
Septum
nTPM: 24.5
Samples: 4

Max nTPM: 33.3
Min nTPM: 20.5
Sample A Male 20.5
Sample B Male 33.3
Sample C Female 23.7
Sample D Female 20.6
Ventral forebrain
nTPM: 17.8
Samples: 4

Max nTPM: 19.8
Min nTPM: 16.2
Sample A Male 17.6
Sample B Male 19.8
Sample C Female 16.2
Sample D Female 17.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.2
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.2
2376 Antisense, RP_Baylor_102883, Mouse strain C57BL/6J (56 days, male) 0.2
79568024 Antisense, RP_071204_02_B01, Mouse strain C57BL/6J (56 days, male) 0.2
79677363 Antisense, RP_071204_02_B01, Mouse strain C57BL/6J (56 days, male) 0.1
2375 Antisense, RP_Baylor_102883, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
2376 Antisense, RP_Baylor_102883, Mouse strain C57BL/6J (56 days, male) 0.1
79568024 Antisense, RP_071204_02_B01, Mouse strain C57BL/6J (56 days, male) 0.1
2375 Antisense, RP_Baylor_102883, Mouse strain C57BL/6J (56 days, male) 0.0
79677363 Antisense, RP_071204_02_B01, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.