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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:101.0 nTPM
HPA:101.0 nTPM
GTEx:112.2 nTPM
FANTOM5:52.9 Scaled Tags Per Million
Pig:8.6 nTPM
Mouse:0.0 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 101.0
Sample id Sample description nTPM
Amygdala
nTPM: 101.0
1987 Female, age 91, left hemisphere 102.7
2814 Male, age 76, right hemisphere 101.8
2514 Male, age 75, right hemisphere 101.7
2517 Female, age 94, left hemisphere 99.7
2695 Female, age 67, right hemisphere 99.0
Basal amygdala
nTPM: 97.4
2110 Male, age 80, left hemisphere 100.3
1955 Male, age 76, both hemispheres 99.2
2609 Male, age 75, right hemisphere 98.7
2685 Female, age 94, left hemisphere 97.7
2243 Female, age 91, right hemisphere 96.0
2827 Female, age 67, right hemisphere 92.7
Central amygdala
nTPM: 99.7
1905 Male, age 76, both hemispheres 102.8
2826 Female, age 94, left hemisphere 101.4
2515 Male, age 75, right hemisphere 98.6
2239 Male, age 80, left hemisphere 98.1
2701 Female, age 91, right hemisphere 97.7
Corticomedial amygdala
nTPM: 98.4
2829 Male, age 80, left hemisphere 101.9
2428 Male, age 75, right hemisphere 100.7
2240 Male, age 76, both hemispheres 98.5
2242 Female, age 91, right hemisphere 98.5
2429 Female, age 94, left hemisphere 97.8
2535 Female, age 67, right hemisphere 92.8
Lateral amygdala
nTPM: 97.9
1883 Male, age 76, both hemispheres 100.8
2516 Male, age 75, right hemisphere 98.9
2534 Female, age 94, left hemisphere 98.6
2255 Female, age 91, right hemisphere 96.7
2256 Male, age 80, left hemisphere 96.3
2830 Female, age 67, right hemisphere 95.7
Stria terminalis, bed nucleus
nTPM: 98.0
1974 Female, age 91, both hemispheres 100.1
2201 Male, age 74, unknown 97.3
2486 Female, age 94, both hemispheres 96.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 112.2
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 112.2
Samples: 152

Max nTPM: 278.9
Min nTPM: 57.4
Std nTPM: 33.2
Median nTPM: 104.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 278.9
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 227.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 226.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 216.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 210.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 205.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 183.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 180.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 177.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 161.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 159.8
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 158.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 157.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 157.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 149.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 146.2
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 143.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 143.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 142.0
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 141.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 141.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 139.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 138.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 138.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 137.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 137.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 136.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 135.8
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 135.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 133.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 132.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 131.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 130.8
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 128.3
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 128.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 126.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 125.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 124.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 121.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 121.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 121.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 119.9
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 119.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 119.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 118.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 117.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 116.4
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 115.1
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 114.8
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 114.2
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 113.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 113.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 113.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 112.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 111.5
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 111.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 110.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 109.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 109.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 108.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 108.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 108.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 107.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 107.7
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 107.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 107.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 107.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 107.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 106.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 106.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 105.5
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 105.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 104.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 104.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 104.4
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 104.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 104.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 103.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 103.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 102.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 102.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 101.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 101.7
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 101.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 101.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 101.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 100.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 100.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 100.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 100.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 99.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 99.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 99.0
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 98.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 98.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 98.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 98.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 97.9
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 97.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 97.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 97.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 97.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 97.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 95.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 95.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 94.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 94.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 94.1
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 93.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 92.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 92.4
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 92.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 91.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 91.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 91.3
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 90.6
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 90.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 90.3
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 90.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 89.3
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 89.3
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 89.2
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 89.0
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 87.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 86.9
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 86.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 85.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 85.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 85.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 84.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 84.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 84.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 83.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 83.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 82.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 82.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 82.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 81.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 81.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 80.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 79.9
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 79.5
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 79.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 78.0
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 77.7
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 76.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 76.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 73.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 72.3
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 69.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 67.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 57.4
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 52.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 52.9
FF:10151-102I7 76 years, female 52.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 8.6
Pig sample Sample description nTPM
Amygdala
nTPM: 8.6
Samples: 4

Max nTPM: 10.9
Min nTPM: 6.6
Sample A Female 10.9
Sample B Female 9.0
Sample C Male 8.0
Sample D Male 6.6

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 0.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

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