MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.4 nTPM
HPA:21.4 nTPM
GTEx:15.7 nTPM
FANTOM5:238.4 Scaled Tags Per Million
Pig:29.7 nTPM
Mouse:17.9 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 19.8
1870 Female, age 42, unknown 26.8
1830 Male, age 51, unknown 25.6
1833 Male, age 53, unknown 23.4
2411 Female, age 72, unknown 21.9
2019 Male, age 18, unknown 20.9
2219 Male, age 76, both hemispheres 19.7
2828 Female, age 72, unknown 18.1
2666 Male, age 74, left hemisphere 14.5
1827 Male, age 72, unknown 14.1
2586 Male, age 75, left hemisphere 13.3
Dorsal raphe nucleus
nTPM: 15.0
2750 Male, age 76, both hemispheres 22.7
2016 Female, age 72, unknown 18.6
1828 Male, age 53, unknown 14.0
2298 Female, age 72, unknown 10.7
2047 Male, age 72, unknown 8.8
Inferior colliculus
nTPM: 15.5
2849 Male, age 72, unknown 18.7
1890 Male, age 53, unknown 15.7
1848 Female, age 42, unknown 15.6
2097 Female, age 72, unknown 12.0
Median raphe nucleus
nTPM: 11.8
2220 Male, age 76, midline 11.8
Pedunculopontine tegmental nucleus
nTPM: 19.1
2338 Male, age 61, both hemispheres 20.2
1921 Female, age 85, both hemispheres 19.4
2334 Male, age 80, both hemispheres 17.6
Periaquaductal grey, anterior
nTPM: 12.8
2502 Female, age 75, unknown 15.8
1947 Male, age 18, unknown 11.8
1795 Male, age 51, unknown 10.7
Periaquaductal grey, dorsal
nTPM: 16.4
1831 Male, age 72, unknown 19.7
2850 Male, age 76, both hemispheres 18.4
1840 Male, age 53, unknown 14.2
2464 Female, age 72, unknown 13.2
Periaquaductal grey, lateral
nTPM: 16.5
2272 Male, age 74, both hemispheres 17.2
2140 Male, age 76, both hemispheres 16.9
2053 Male, age 18, unknown 15.4
Pretectal area
nTPM: 16.1
2316 Male, age 76, right hemisphere 22.2
2407 Male, age 75, both hemispheres 21.6
2667 Female, age 75, unknown 21.4
2273 Male, age 74, both hemispheres 20.5
2825 Male, age 18, unknown 17.7
1815 Male, age 53, unknown 16.8
1817 Female, age 42, unknown 14.2
2224 Female, age 72, unknown 13.1
2007 Male, age 72, unknown 12.3
1944 Female, age 72, unknown 10.1
1816 Male, age 51, unknown 7.3
Red nucleus
nTPM: 21.4
1865 Male, age 51, unknown 28.4
1904 Male, age 53, unknown 26.6
2785 Male, age 18, unknown 25.3
2769 Male, age 72, unknown 24.6
1821 Female, age 72, unknown 24.0
2227 Male, age 72, unknown 23.7
1954 Female, age 42, unknown 20.7
2503 Female, age 72, unknown 20.5
2823 Male, age 76, right hemisphere 20.1
2584 Male, age 75, left hemisphere 16.5
2588 Male, age 74, left hemisphere 16.0
2725 Female, age 75, unknown 10.7
Substantia nigra
nTPM: 17.9
2409 Female, age 72, unknown 25.4
2699 Male, age 18, unknown 24.4
1851 Male, age 51, unknown 21.6
1889 Female, age 72, unknown 17.9
2583 Male, age 75, right hemisphere 17.7
2590 Female, age 75, unknown 15.2
1916 Female, age 42, unknown 14.9
2665 Male, age 74, both hemispheres 14.2
1941 Male, age 53, unknown 14.0
2241 Male, age 72, unknown 13.6
Superior colliculus
nTPM: 19.6
1995 Male, age 72, unknown 29.7
1913 Female, age 42, unknown 28.8
2668 Female, age 75, unknown 23.6
2587 Male, age 74, left hemisphere 21.8
1839 Male, age 51, unknown 21.3
1895 Male, age 76, right hemisphere 20.7
1796 Male, age 53, unknown 15.9
2664 Male, age 75, both hemispheres 13.1
2087 Female, age 72, unknown 11.0
2261 Male, age 18, unknown 9.5
Ventral tegmental area
nTPM: 18.5
2410 Female, age 72, unknown 21.6
2223 Female, age 72, unknown 20.1
1915 Female, age 42, unknown 18.7
2021 Male, age 53, unknown 18.2
2218 Male, age 76, both hemispheres 17.4
1942 Male, age 51, unknown 15.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 15.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 15.7
Samples: 139

Max nTPM: 44.6
Min nTPM: 6.6
Std nTPM: 6.0
Median nTPM: 13.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 44.6
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 33.7
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 32.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 31.9
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 31.5
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 30.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 29.4
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 28.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 26.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 26.4
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 25.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 238.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 238.4
FF:10158-103A5 76 years, female 238.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 29.7
Pig sample Sample description nTPM
Midbrain
nTPM: 28.5
Samples: 4

Max nTPM: 45.7
Min nTPM: 21.4
Sample A Female 45.7
Sample B Female 22.4
Sample C Male 24.3
Sample D Male 21.4
Periaqueductal gray
nTPM: 29.7
Samples: 3

Max nTPM: 33.8
Min nTPM: 27.0
Sample B Female 28.3
Sample C Male 27.0
Sample D Male 33.8
Substantia nigra
nTPM: 25.5
Samples: 4

Max nTPM: 31.9
Min nTPM: 21.2
Sample A Female 23.1
Sample B Female 21.2
Sample C Male 25.9
Sample D Male 31.9
Superior colliculi
nTPM: 21.7
Samples: 4

Max nTPM: 29.3
Min nTPM: 14.6
Sample A Female 18.7
Sample B Female 14.6
Sample C Male 24.3
Sample D Male 29.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.9
Samples: 4

Max nTPM: 19.3
Min nTPM: 16.4
Sample A Male 16.4
Sample B Male 18.2
Sample C Female 19.3
Sample D Female 17.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
73521809 Antisense, RP_051101_03_A08, Mouse strain C57BL/6J (56 days, male) 0.2
69816984 Antisense, RP_050510_02_D05, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.