MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:44.9 nTPM
HPA:44.9 nTPM
GTEx:36.3 nTPM
FANTOM5:48.6 Scaled Tags Per Million
Pig:26.1 nTPM
Mouse:9.0 nTPM
Allen mouse:0.3 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 44.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.4
2828 Female, age 72, unknown 45.9
1833 Male, age 53, unknown 43.7
1830 Male, age 51, unknown 43.6
1870 Female, age 42, unknown 42.5
2586 Male, age 75, left hemisphere 42.5
2666 Male, age 74, left hemisphere 41.8
2019 Male, age 18, unknown 41.7
2411 Female, age 72, unknown 41.2
2219 Male, age 76, both hemispheres 40.8
1827 Male, age 72, unknown 40.4
Dorsal raphe nucleus
nTPM: 41.6
2016 Female, age 72, unknown 45.2
1828 Male, age 53, unknown 42.7
2750 Male, age 76, both hemispheres 40.9
2047 Male, age 72, unknown 40.0
2298 Female, age 72, unknown 39.3
Inferior colliculus
nTPM: 41.4
1890 Male, age 53, unknown 42.3
2849 Male, age 72, unknown 41.9
1848 Female, age 42, unknown 41.2
2097 Female, age 72, unknown 40.0
Median raphe nucleus
nTPM: 38.6
2220 Male, age 76, midline 38.6
Pedunculopontine tegmental nucleus
nTPM: 40.5
2334 Male, age 80, both hemispheres 41.1
1921 Female, age 85, both hemispheres 40.8
2338 Male, age 61, both hemispheres 39.4
Periaquaductal grey, anterior
nTPM: 41.6
2502 Female, age 75, unknown 44.4
1795 Male, age 51, unknown 41.2
1947 Male, age 18, unknown 39.3
Periaquaductal grey, dorsal
nTPM: 41.9
2850 Male, age 76, both hemispheres 44.7
1831 Male, age 72, unknown 41.3
2464 Female, age 72, unknown 41.1
1840 Male, age 53, unknown 40.6
Periaquaductal grey, lateral
nTPM: 43.3
2140 Male, age 76, both hemispheres 46.5
2053 Male, age 18, unknown 42.7
2272 Male, age 74, both hemispheres 40.7
Pretectal area
nTPM: 42.4
2316 Male, age 76, right hemisphere 46.9
2667 Female, age 75, unknown 44.1
1815 Male, age 53, unknown 43.8
1817 Female, age 42, unknown 43.4
2273 Male, age 74, both hemispheres 42.7
2007 Male, age 72, unknown 42.3
2825 Male, age 18, unknown 42.1
1944 Female, age 72, unknown 41.1
2224 Female, age 72, unknown 41.1
2407 Male, age 75, both hemispheres 40.4
1816 Male, age 51, unknown 38.9
Red nucleus
nTPM: 44.9
2503 Female, age 72, unknown 47.6
1821 Female, age 72, unknown 47.4
1865 Male, age 51, unknown 47.3
1904 Male, age 53, unknown 47.2
2769 Male, age 72, unknown 45.5
2785 Male, age 18, unknown 45.4
2227 Male, age 72, unknown 45.0
1954 Female, age 42, unknown 44.6
2588 Male, age 74, left hemisphere 44.1
2823 Male, age 76, right hemisphere 42.7
2725 Female, age 75, unknown 41.6
2584 Male, age 75, left hemisphere 40.0
Substantia nigra
nTPM: 42.4
2699 Male, age 18, unknown 49.0
2590 Female, age 75, unknown 44.2
1851 Male, age 51, unknown 43.8
1889 Female, age 72, unknown 42.6
2409 Female, age 72, unknown 42.5
2665 Male, age 74, both hemispheres 42.2
2583 Male, age 75, right hemisphere 42.0
1916 Female, age 42, unknown 40.6
2241 Male, age 72, unknown 39.8
1941 Male, age 53, unknown 37.5
Superior colliculus
nTPM: 44.0
1995 Male, age 72, unknown 50.6
1913 Female, age 42, unknown 46.8
1895 Male, age 76, right hemisphere 45.9
2587 Male, age 74, left hemisphere 44.3
2664 Male, age 75, both hemispheres 43.4
1796 Male, age 53, unknown 42.7
1839 Male, age 51, unknown 42.7
2087 Female, age 72, unknown 41.9
2261 Male, age 18, unknown 41.2
2668 Female, age 75, unknown 40.4
Ventral tegmental area
nTPM: 42.0
2410 Female, age 72, unknown 43.9
2021 Male, age 53, unknown 42.9
1915 Female, age 42, unknown 42.8
1942 Male, age 51, unknown 42.2
2223 Female, age 72, unknown 42.0
2218 Male, age 76, both hemispheres 38.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 36.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 36.3
Samples: 139

Max nTPM: 63.9
Min nTPM: 11.2
Std nTPM: 11.7
Median nTPM: 34.6
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 63.9
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 63.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 63.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 61.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 60.1
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 58.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 58.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 57.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 56.2
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 55.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 54.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 48.6
FF:10158-103A5 76 years, female 48.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.1
Pig sample Sample description nTPM
Midbrain
nTPM: 21.7
Samples: 4

Max nTPM: 29.7
Min nTPM: 13.6
Sample A Female 29.7
Sample B Female 22.6
Sample C Male 21.0
Sample D Male 13.6
Periaqueductal gray
nTPM: 17.6
Samples: 3

Max nTPM: 21.9
Min nTPM: 14.8
Sample B Female 21.9
Sample C Male 14.8
Sample D Male 16.0
Substantia nigra
nTPM: 23.3
Samples: 4

Max nTPM: 29.7
Min nTPM: 18.5
Sample A Female 19.5
Sample B Female 29.7
Sample C Male 18.5
Sample D Male 25.6
Superior colliculi
nTPM: 26.1
Samples: 4

Max nTPM: 39.0
Min nTPM: 21.2
Sample A Female 22.9
Sample B Female 39.0
Sample C Male 21.3
Sample D Male 21.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 9.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 9.1
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.8
Sample A Male 8.6
Sample B Male 7.8
Sample C Female 9.5
Sample D Female 10.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
77790716 Antisense, RP_070208_04_A08, Mouse strain C57BL/6J (56 days, male) 0.3
69133686 Antisense, RP_050321_02_A10, Mouse strain C57BL/6J (56 days, male) 0.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.