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RGP1
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                                • RGP1
                                BRAIN AMYGDALA Show tissue menu
                                AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
                                OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
                                ANTIBODIES
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                                VALIDATION
                                Brain proteome
                                Amygdala
                                AMYGDALA - Expression summary
                                Protein profiling
                                Multiplex tissuei

                                A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

                                Protein expressioni

                                On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

                                Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

                                If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

                                Read more
                                No data
                                RNA expressioni

                                A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

                                The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

                                Scroll down to view mRNA expression data in more detail.
                                Read more
                                Consensus:7.5 nTPM
                                HPA:7.5 nTPM
                                GTEx:6.3 nTPM
                                FANTOM5:30.7 Scaled Tags Per Million
                                Pig:4.5 nTPM
                                Mouse:14.1 nTPM
                                Allen mouse:0.7 Expression energy

                                AMYGDALA - HPA Brain RNA-seq
                                Max nTPM 7.5
                                Sample id Sample description nTPM
                                Amygdala
                                nTPM: 5.8
                                2695 Female, age 67, right hemisphere 7.2
                                2517 Female, age 94, left hemisphere 5.6
                                2814 Male, age 76, right hemisphere 5.6
                                2514 Male, age 75, right hemisphere 5.4
                                1987 Female, age 91, left hemisphere 5.3
                                Basal amygdala
                                nTPM: 7.5
                                2827 Female, age 67, right hemisphere 8.7
                                2243 Female, age 91, right hemisphere 8.2
                                2685 Female, age 94, left hemisphere 7.6
                                2609 Male, age 75, right hemisphere 7.3
                                2110 Male, age 80, left hemisphere 6.5
                                1955 Male, age 76, both hemispheres 6.4
                                Central amygdala
                                nTPM: 6.6
                                2826 Female, age 94, left hemisphere 7.5
                                2515 Male, age 75, right hemisphere 6.8
                                2239 Male, age 80, left hemisphere 6.7
                                1905 Male, age 76, both hemispheres 6.0
                                2701 Female, age 91, right hemisphere 6.0
                                Corticomedial amygdala
                                nTPM: 6.7
                                2829 Male, age 80, left hemisphere 7.7
                                2535 Female, age 67, right hemisphere 7.0
                                2240 Male, age 76, both hemispheres 6.8
                                2242 Female, age 91, right hemisphere 6.8
                                2428 Male, age 75, right hemisphere 6.0
                                2429 Female, age 94, left hemisphere 6.0
                                Lateral amygdala
                                nTPM: 7.2
                                2830 Female, age 67, right hemisphere 9.0
                                2534 Female, age 94, left hemisphere 7.9
                                2516 Male, age 75, right hemisphere 7.2
                                2256 Male, age 80, left hemisphere 6.6
                                2255 Female, age 91, right hemisphere 6.3
                                1883 Male, age 76, both hemispheres 6.2
                                Stria terminalis, bed nucleus
                                nTPM: 6.3
                                2201 Male, age 74, unknown 6.5
                                1974 Female, age 91, both hemispheres 6.3
                                2486 Female, age 94, both hemispheres 6.0

                                AMYGDALA - GTEx RNA-seqi

                                RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

                                Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                Read more
                                Average nTPM 6.3
                                GTEx sample id Sample description nTPM
                                5.46.37.13.19.30123456789
                                5.46.37.13.19.30123456789
                                Brain - Amygdala
                                Average nTPM: 6.3
                                Samples: 152

                                Max nTPM: 9.3
                                Min nTPM: 3.1
                                Std nTPM: 1.1
                                Median nTPM: 6.3
                                GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 9.3
                                GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 9.2
                                GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 9.2
                                GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 9.2
                                GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 8.6
                                GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 8.6
                                GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 8.5
                                GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 8.4
                                GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 8.4
                                GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 8.4
                                GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 8.2
                                GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 8.2
                                GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 8.2
                                GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 8.1
                                GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 8.0
                                GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 8.0
                                GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 8.0
                                GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 7.9
                                GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 7.8
                                GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 7.7
                                GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 7.7
                                GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 7.6
                                GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 7.6
                                GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 7.5
                                GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 7.5
                                GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 7.5
                                GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 7.5
                                GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 7.4
                                GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 7.4
                                GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 7.4
                                GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 7.3
                                GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 7.2
                                GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 7.2
                                GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 7.2
                                GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 7.2
                                GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 7.2
                                GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 7.1
                                GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 7.1
                                GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 7.1
                                GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 7.1
                                GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 7.0
                                GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 7.0
                                GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 7.0
                                GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 7.0
                                GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 6.9
                                GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 6.8
                                GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 6.8
                                GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 6.8
                                GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 6.8
                                GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 6.8
                                GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 6.8
                                GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 6.7
                                GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 6.7
                                GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 6.7
                                GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 6.7
                                GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 6.7
                                GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 6.7
                                GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 6.7
                                GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 6.7
                                GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 6.6
                                GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 6.6
                                GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 6.6
                                GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 6.6
                                GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 6.5
                                GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 6.5
                                GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 6.5
                                GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 6.4
                                GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 6.4
                                GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 6.4
                                GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 6.4
                                GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 6.4
                                GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 6.4
                                GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 6.4
                                GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 6.3
                                GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 6.3
                                GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 6.3
                                GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 6.3
                                GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 6.3
                                GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 6.3
                                GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 6.3
                                GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 6.2
                                GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 6.2
                                GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 6.2
                                GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 6.2
                                GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 6.2
                                GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 6.2
                                GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 6.2
                                GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 6.1
                                GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 6.1
                                GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 6.1
                                GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 6.1
                                GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 6.1
                                GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 6.1
                                GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 6.0
                                GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 6.0
                                GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 6.0
                                GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 6.0
                                GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 6.0
                                GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 6.0
                                GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 5.9
                                GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 5.9
                                GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 5.9
                                GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 5.8
                                GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 5.8
                                GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 5.7
                                GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 5.7
                                GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 5.7
                                GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 5.7
                                GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 5.6
                                GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 5.6
                                GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 5.5
                                GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 5.5
                                GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 5.5
                                GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 5.4
                                GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 5.4
                                GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 5.4
                                GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 5.4
                                GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 5.4
                                GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 5.4
                                GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 5.4
                                GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 5.3
                                GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 5.3
                                GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 5.3
                                GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 5.2
                                GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 5.2
                                GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 5.2
                                GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 5.2
                                GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 5.1
                                GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 5.1
                                GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 5.0
                                GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 5.0
                                GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 5.0
                                GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 5.0
                                GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 5.0
                                GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 4.9
                                GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 4.9
                                GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 4.9
                                GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 4.9
                                GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 4.8
                                GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 4.8
                                GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 4.7
                                GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 4.7
                                GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 4.5
                                GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 4.5
                                GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 4.4
                                GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 4.3
                                GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 4.3
                                GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 4.3
                                GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 4.2
                                GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 4.2
                                GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 3.9
                                GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 3.1
                                Show allShow less

                                AMYGDALA - FANTOM5 CAGEi

                                RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

                                Read more
                                Max Scaled Tags Per Million 30.7
                                FANTOM5 sample id Sample description Scaled Tags Per Million
                                Amygdala
                                Scaled Tags Per Million: 30.7
                                FF:10151-102I7 76 years, female 30.7

                                AMYGDALA - Pig RNA-seqi

                                RNA-seq data obtained from pig brain is reported as nTPM .

                                Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                Read more
                                Average nTPM 4.5
                                Pig sample Sample description nTPM
                                4.14.65.03.85.10.00.51.01.52.02.53.03.54.04.55.0
                                4.14.65.03.85.10.00.51.01.52.02.53.03.54.04.55.0
                                Amygdala
                                nTPM: 4.5
                                Samples: 4

                                Max nTPM: 5.1
                                Min nTPM: 3.8
                                Sample A Female 5.1
                                Sample B Female 3.8
                                Sample C Male 4.2
                                Sample D Male 4.9

                                AMYGDALA - Mouse RNA-seqi

                                RNA-seq data obtained from mouse brain is reported as nTPM .

                                Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
                                Read more
                                Average nTPM 14.1
                                Mouse sample Sample description nTPM
                                13.513.514.113.413.502468101214
                                13.513.514.113.413.502468101214
                                Amygdala
                                nTPM: 14.0
                                Samples: 4

                                Max nTPM: 15.7
                                Min nTPM: 13.4
                                Sample A Male 15.7
                                Sample B Male 13.5
                                Sample C Female 13.5
                                Sample D Female 13.4

                                AMYGDALA - Allen Mouse ISHi

                                In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

                                Read more
                                Max Expression energy 0.7
                                Allen experiment id Experiment description Expression energy
                                Cortical subplate
                                Expression energy: 0.7
                                71281241 Antisense, RP_050818_02_C07, Mouse strain C57BL/6J (56 days, male) 1.4
                                70725555 Antisense, RP_050705_04_C03, Mouse strain C57BL/6J (56 days, male) 0.0

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