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RAPGEF1
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  • RAPGEF1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:46.9 nTPM
FANTOM5:45.2 Scaled Tags Per Million
Pig:17.4 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA006426
Glial cells Not detected


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 46.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 46.9
Samples: 246

Max nTPM: 106.0
Min nTPM: 17.1
Std nTPM: 15.0
Median nTPM: 43.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 106.0
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 94.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 86.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 83.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 83.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 80.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 77.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 75.9
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 75.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 75.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 75.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 75.1
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 75.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 75.0
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 74.4
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 74.0
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 73.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 73.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 73.5
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 72.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 72.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 71.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 71.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 71.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 70.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 70.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 69.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 67.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 67.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 66.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 65.9
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 65.5
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 65.0
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 64.8
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 63.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 63.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 63.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 62.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 62.5
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 62.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 62.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 61.7
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 61.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 60.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 60.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 59.2
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 59.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 58.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 58.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 58.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 58.0
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 58.0
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 57.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 57.7
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 57.6
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 57.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 56.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 56.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 56.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 56.3
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 56.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 56.0
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 55.4
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 55.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 55.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 54.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 54.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 54.7
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 54.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 54.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 54.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 53.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 53.9
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 53.7
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 53.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 53.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 53.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 52.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 52.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 52.0
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 51.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 51.8
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 51.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 51.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 51.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 51.1
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 51.1
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 51.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 50.9
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 50.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 50.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 50.7
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 50.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 50.5
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 50.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 50.2
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 50.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 49.8
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 49.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 49.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 49.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 49.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 48.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 48.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 48.2
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 48.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 46.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 46.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 46.1
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 45.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 45.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 45.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 45.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 45.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 45.2
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 44.9
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 44.9
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 44.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 44.4
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 44.3
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 44.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 44.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 43.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 43.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 43.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 42.8
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 42.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 42.6
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 42.6
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 42.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 42.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 42.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 41.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 41.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 41.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 41.2
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 41.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 41.1
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 41.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 40.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 40.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 40.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 40.4
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 40.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 39.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 39.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 39.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 39.5
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 39.5
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 39.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 39.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 39.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 39.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 39.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 38.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 38.5
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 38.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 38.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 38.3
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 38.2
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 38.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 38.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 37.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 37.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 37.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 37.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 37.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 37.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 37.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 37.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 37.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 37.2
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 37.0
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 36.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 36.8
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 36.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 36.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 36.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 36.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 36.4
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 36.3
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 36.2
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 36.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 36.2
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 36.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 35.8
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 35.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 35.2
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 35.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 35.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 35.0
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 35.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 34.8
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 34.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 34.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 34.3
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 34.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 33.8
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 33.7
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 33.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 33.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 33.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 32.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 32.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 32.5
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 32.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 32.3
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 32.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 32.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 31.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 31.8
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 31.7
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 31.3
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 31.3
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 31.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 31.0
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 31.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 30.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 30.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 30.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 30.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 30.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 30.3
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 30.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 29.9
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 29.7
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 28.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 28.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 28.2
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 28.2
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 28.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 28.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 27.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 27.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 27.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 27.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 26.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 26.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 26.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 25.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 25.1
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 25.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 25.0
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 24.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 24.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 17.1
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 45.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.2
FF:10164-103B2 76 years, female 45.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 17.4
Pig sample Sample description nTPM
Caudate
nTPM: 17.4
Samples: 4

Max nTPM: 21.1
Min nTPM: 13.3
Sample A Female 13.3
Sample B Female 17.7
Sample C Male 21.1
Sample D Male 17.5

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