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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:140.8 nTPM
HPA:140.8 nTPM
GTEx:172.9 nTPM
FANTOM5:243.2 Scaled Tags Per Million
Pig:66.0 nTPM
Mouse:160.0 nTPM
Allen mouse:27.8 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 140.8
Sample id Sample description nTPM
Amygdala
nTPM: 119.4
2695 Female, age 67, right hemisphere 128.5
2517 Female, age 94, left hemisphere 126.2
1987 Female, age 91, left hemisphere 124.4
2814 Male, age 76, right hemisphere 115.7
2514 Male, age 75, right hemisphere 102.1
Basal amygdala
nTPM: 136.2
2685 Female, age 94, left hemisphere 148.6
2243 Female, age 91, right hemisphere 145.9
2827 Female, age 67, right hemisphere 134.0
2609 Male, age 75, right hemisphere 133.8
1955 Male, age 76, both hemispheres 128.8
2110 Male, age 80, left hemisphere 126.0
Central amygdala
nTPM: 140.8
2826 Female, age 94, left hemisphere 176.9
2515 Male, age 75, right hemisphere 148.5
2239 Male, age 80, left hemisphere 131.9
2701 Female, age 91, right hemisphere 127.8
1905 Male, age 76, both hemispheres 119.0
Corticomedial amygdala
nTPM: 129.3
2535 Female, age 67, right hemisphere 145.5
2242 Female, age 91, right hemisphere 141.2
2829 Male, age 80, left hemisphere 135.3
2429 Female, age 94, left hemisphere 128.7
2428 Male, age 75, right hemisphere 118.7
2240 Male, age 76, both hemispheres 106.2
Lateral amygdala
nTPM: 132.7
2534 Female, age 94, left hemisphere 161.9
2255 Female, age 91, right hemisphere 136.0
2256 Male, age 80, left hemisphere 128.2
2830 Female, age 67, right hemisphere 125.6
2516 Male, age 75, right hemisphere 123.8
1883 Male, age 76, both hemispheres 120.8
Stria terminalis, bed nucleus
nTPM: 126.2
2201 Male, age 74, unknown 130.2
1974 Female, age 91, both hemispheres 126.8
2486 Female, age 94, both hemispheres 121.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 172.9
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 172.9
Samples: 152

Max nTPM: 297.6
Min nTPM: 70.6
Std nTPM: 42.4
Median nTPM: 170.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 297.6
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 277.8
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 274.1
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 262.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 256.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 256.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 250.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 248.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 238.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 234.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 231.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 229.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 228.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 225.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 224.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 223.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 223.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 220.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 220.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 219.7
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 219.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 218.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 218.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 217.8
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 217.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 216.1
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 216.0
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 213.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 212.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 212.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 212.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 209.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 209.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 205.2
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 204.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 203.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 201.1
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 199.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 198.9
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 196.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 195.5
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 195.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 194.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 194.2
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 193.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 193.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 191.5
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 191.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 191.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 191.1
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 190.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 187.3
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 186.8
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 186.6
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 186.0
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 185.0
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 184.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 184.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 184.4
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 184.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 182.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 182.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 181.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 181.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 181.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 178.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 177.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 176.9
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 176.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 176.0
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 175.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 173.6
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 173.3
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 172.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 172.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 171.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 170.5
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 169.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 169.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 169.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 166.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 166.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 166.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 165.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 164.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 164.4
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 164.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 164.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 164.0
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 163.5
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 161.4
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 161.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 160.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 160.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 160.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 159.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 159.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 158.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 158.5
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 157.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 156.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 156.8
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 155.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 154.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 154.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 153.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 153.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 153.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 152.0
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 151.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 149.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 148.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 148.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 147.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 147.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 147.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 146.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 144.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 143.9
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 142.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 142.4
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 141.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 141.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 140.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 139.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 138.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 132.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 132.5
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 132.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 126.1
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 123.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 123.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 121.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 120.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 118.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 117.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 115.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 113.7
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 110.2
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 109.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 108.9
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 106.5
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 104.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 104.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 102.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 102.0
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 94.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 88.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 86.3
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 81.8
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 78.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 70.6
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 243.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 243.2
FF:10151-102I7 76 years, female 243.2

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 66.0
Pig sample Sample description nTPM
Amygdala
nTPM: 66.0
Samples: 4

Max nTPM: 90.8
Min nTPM: 52.9
Sample A Female 90.8
Sample B Female 52.9
Sample C Male 65.7
Sample D Male 54.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 160.0
Mouse sample Sample description nTPM
Amygdala
nTPM: 160.0
Samples: 4

Max nTPM: 174.4
Min nTPM: 141.3
Sample A Male 166.3
Sample B Male 141.3
Sample C Female 174.4
Sample D Female 157.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 27.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 27.8
715 Antisense, RP_040324_01_E08, Mouse strain C57BL/6J (56 days, male) 27.8
716 Antisense, RP_040324_01_E08, Mouse strain C57BL/6J (56 days, male) 13.7

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