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ABCA2
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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:255.1 nTPM
HPA:255.1 nTPM
FANTOM5:299.0 Scaled Tags Per Million
Allen mouse:13.8 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 255.1
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 203.0
2301 Female, age 85, both hemispheres 257.0
2090 Male, age 80, both hemispheres 236.5
2188 Female, age 91, both hemispheres 235.3
1984 Male, age 76, both hemispheres 83.1
Dorsal cochlear nucleus
nTPM: 152.9
2187 Female, age 91, both hemispheres 199.2
2378 Male, age 80, both hemispheres 152.6
2802 Male, age 74, right hemisphere 144.8
2370 Male, age 61, both hemispheres 139.6
2058 Male, age 76, both hemispheres 128.2
Dorsal tegmental nucleus
nTPM: 127.3
2083 Male, age 80, both hemispheres 200.4
2326 Male, age 74, both hemispheres 148.4
1936 Male, age 76, left hemisphere 114.3
2358 Male, age 61, both hemispheres 46.3
Dorsolateral tegmental area
nTPM: 139.8
2751 Female, age 85, both hemispheres 222.6
2654 Male, age 80, both hemispheres 176.5
2337 Male, age 61, both hemispheres 152.5
2360 Male, age 74, both hemispheres 82.6
2141 Male, age 76, both hemispheres 64.8
Kolliker-Fuse nucleus
nTPM: 149.8
2793 Female, age 91, left hemisphere 234.3
2163 Male, age 80, both hemispheres 143.2
2315 Male, age 76, right hemisphere 71.8
Lateral lemniscal nuclei
nTPM: 176.7
2320 Female, age 91, left hemisphere 240.2
2746 Female, age 85, left hemisphere 179.6
2036 Male, age 80, both hemispheres 171.5
2453 Male, age 74, right hemisphere 152.7
2169 Male, age 76, both hemispheres 139.5
Lateral parabrachial nucleus
nTPM: 164.2
2792 Male, age 76, both hemispheres 227.0
2013 Male, age 80, both hemispheres 194.3
2139 Female, age 85, right hemisphere 121.0
2790 Male, age 61, both hemispheres 114.4
Lateral vestibular nucleus
nTPM: 174.4
2311 Male, age 80, both hemispheres 182.9
2184 Male, age 76, both hemispheres 166.0
Locus coeruleus
nTPM: 52.2
2162 Male, age 80, both hemispheres 92.1
2720 Male, age 74, both hemispheres 69.4
2317 Female, age 72, unknown 68.0
2123 Female, age 91, both hemispheres 51.9
2014 Male, age 55, unknown 40.0
1980 Male, age 76, both hemispheres 29.7
2788 Male, age 74, unknown 14.5
Medial olivary nucleus
nTPM: 255.1
1943 Male, age 61, both hemispheres 364.7
1962 Male, age 76, both hemispheres 255.0
2138 Female, age 91, both hemispheres 211.5
2851 Male, age 80, both hemispheres 189.3
Medial parabrachial nucleus
nTPM: 175.6
2170 Female, age 91, both hemispheres 237.1
2463 Female, age 85, right hemisphere 200.4
2786 Male, age 76, both hemispheres 163.0
2854 Male, age 80, both hemispheres 150.5
2156 Male, age 61, both hemispheres 126.8
Medial periolivary nuclei
nTPM: 157.0
2081 Male, age 80, both hemispheres 239.2
2458 Female, age 91, both hemispheres 193.9
2791 Male, age 74, right hemisphere 141.4
2063 Male, age 76, both hemispheres 112.2
2171 Female, age 85, both hemispheres 98.3
Motor facial nucleus
nTPM: 163.5
2126 Male, age 61, both hemispheres 279.2
2697 Female, age 85, both hemispheres 176.6
2365 Male, age 74, right hemisphere 150.5
2327 Male, age 80, both hemispheres 147.2
2795 Female, age 91, both hemispheres 124.1
2062 Male, age 76, both hemispheres 103.3
Motor trigeminal nucleus
nTPM: 188.7
2321 Female, age 91, both hemispheres 242.0
2560 Male, age 74, both hemispheres 218.3
2309 Male, age 76, both hemispheres 172.2
2079 Male, age 80, both hemispheres 163.0
2335 Male, age 61, both hemispheres 148.2
Nuclei of the trapezoid body
nTPM: 151.1
2166 Male, age 80, both hemispheres 209.5
2159 Male, age 61, both hemispheres 200.0
2368 Female, age 91, both hemispheres 164.3
1983 Male, age 76, both hemispheres 104.7
2735 Female, age 85, both hemispheres 77.0
Paramedian reticular nucleus
nTPM: 140.8
2057 Male, age 80, both hemispheres 183.9
2313 Male, age 61, both hemispheres 129.5
2050 Female, age 85, both hemispheres 128.7
2052 Male, age 76, both hemispheres 121.0
Pontine nuclei
nTPM: 198.0
2454 Male, age 74, left hemisphere 267.1
2319 Female, age 91, both hemispheres 253.6
2115 Male, age 80, left hemisphere 235.1
1968 Male, age 76, left hemisphere 208.7
2109 Female, age 72, unknown 189.7
1863 Male, age 55, unknown 149.5
2727 Male, age 61, right hemisphere 144.8
2787 Female, age 85, both hemispheres 135.5
Pontine raphe nucleus
nTPM: 102.7
2122 Female, age 85, midline 112.0
2853 Male, age 76, midline 93.3
Posteroventral cochlear nucleus
nTPM: 194.9
2135 Female, age 91, both hemispheres 301.3
2341 Male, age 80, both hemispheres 211.7
2070 Male, age 76, both hemispheres 209.0
2371 Male, age 61, both hemispheres 147.8
2752 Female, age 85, both hemispheres 104.8
Principal sensory trigeminal nucleus
nTPM: 153.7
2367 Female, age 91, left hemisphere 218.9
2324 Male, age 76, both hemispheres 149.4
2008 Male, age 80, left hemisphere 131.8
2158 Male, age 61, both hemispheres 114.9
Reticular pontine nucleus, caudal
nTPM: 196.2
2559 Male, age 74, both hemispheres 241.2
2457 Female, age 91, both hemispheres 201.9
2092 Male, age 76, both hemispheres 179.9
2332 Male, age 80, right hemisphere 162.0
Reticular pontine nucleus, oral
nTPM: 193.6
2366 Female, age 91, both hemispheres 248.9
2361 Male, age 74, both hemispheres 201.0
2167 Male, age 76, both hemispheres 179.1
1939 Male, age 80, both hemispheres 175.0
2012 Female, age 85, both hemispheres 163.8
Reticulotegmental nucleus
nTPM: 149.6
2452 Male, age 74, both hemispheres 183.2
2322 Female, age 91, both hemispheres 168.4
2333 Male, age 80, both hemispheres 157.2
2325 Male, age 76, both hemispheres 89.6
Spinal trigeminal nucleus, oral
nTPM: 140.6
2164 Male, age 80, both hemispheres 169.2
1978 Male, age 76, both hemispheres 155.5
2737 Female, age 85, both hemispheres 97.1
Subcoeruleus area
nTPM: 159.3
2369 Female, age 85, left hemisphere 254.3
2089 Male, age 76, left hemisphere 188.7
2451 Male, age 74, both hemispheres 133.1
1958 Male, age 80, both hemispheres 118.2
2323 Female, age 91, left hemisphere 102.3
Superior olive
nTPM: 174.1
2329 Male, age 80, right hemisphere 219.5
2020 Male, age 76, both hemispheres 195.8
2561 Female, age 91, both hemispheres 181.9
2364 Male, age 74, right hemisphere 157.6
1875 Female, age 85, both hemispheres 115.8
Superior vestibular nucleus
nTPM: 107.1
2015 Male, age 80, both hemispheres 131.9
2061 Male, age 76, both hemispheres 122.6
2383 Male, age 74, both hemispheres 66.8
Ventral periolivary nuclei
nTPM: 140.0
2023 Male, age 76, both hemispheres 199.2
2165 Male, age 80, both hemispheres 142.3
2794 Female, age 91, left hemisphere 123.1
2130 Female, age 85, both hemispheres 95.2
Ventrolateral tegmental area, A5 NE cell group
nTPM: 159.4
2456 Female, age 91, both hemispheres 222.0
2161 Male, age 80, both hemispheres 172.0
1959 Male, age 76, both hemispheres 153.2
2449 Male, age 74, both hemispheres 150.7
2840 Female, age 85, both hemispheres 141.6
2359 Male, age 61, both hemispheres 117.1

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 299.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 299.0
FF:10182-103D2 60 years, female 329.2
FF:10165-103B3 76 years, female 268.7
Pons
Scaled Tags Per Million: 252.1
FF:10033-101E6 18-54 years, mixed 252.1

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 13.8
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 13.8
69514530 Antisense, RP_050419_03_E11, Mouse strain C57BL/6J (56 days, male) 13.8

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