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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:204.9 nTPM
HPA:204.9 nTPM
FANTOM5:420.0 Scaled Tags Per Million
Mouse:69.2 nTPM
Allen mouse:13.4 Expression energy

THALAMUS - HPA Brain RNA-seq
Max nTPM 204.9
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 102.1
2032 Female, age 42, unknown 136.3
2497 Male, age 66, unknown 108.8
2396 Male, age 61, right hemisphere 61.1
Centromedial thalamic nucleus
nTPM: 204.9
2279 Female, age 85, left hemisphere 287.7
2401 Male, age 76, right hemisphere 122.1
Habenula
nTPM: 26.7
2203 Male, age 61, left hemisphere 42.1
2252 Male, age 62, unknown 29.1
2276 Male, age 66, unknown 19.3
1957 Male, age 80, both hemispheres 16.4
Lateral geniculate body
nTPM: 142.2
2575 Female, age 94, right hemisphere 277.4
2841 Male, age 80, both hemispheres 211.5
2035 Female, age 72, unknown 138.6
2659 Male, age 66, unknown 136.3
2106 Female, age 67, right hemisphere 112.1
1953 Male, age 62, unknown 98.0
2399 Male, age 61, left hemisphere 87.0
2857 Male, age 74, right hemisphere 76.4
Lateral thalamic nuclei
nTPM: 120.7
2765 Female, age 67, both hemispheres 188.2
2573 Female, age 94, left hemisphere 165.8
2661 Female, age 72, unknown 115.0
2577 Male, age 74, both hemispheres 103.5
1903 Male, age 76, left hemisphere 31.0
Medial dorsal thalamic nucleus
nTPM: 56.7
2660 Female, age 72, unknown 175.8
2576 Male, age 74, both hemispheres 91.9
1859 Male, age 76, both hemispheres 89.0
1930 Female, age 42, unknown 66.1
2492 Male, age 75, right hemisphere 61.4
1810 Male, age 48, unknown 54.9
2283 Male, age 80, right hemisphere 41.3
2402 Female, age 67, both hemispheres 39.4
1971 Male, age 61, right hemisphere 31.4
2026 Male, age 62, unknown 30.0
2039 Female, age 72, unknown 29.8
2498 Male, age 66, unknown 26.5
2572 Female, age 94, right hemisphere 0.0
Medial geniculate body
nTPM: 81.8
2217 Female, age 72, unknown 130.2
2571 Male, age 75, right hemisphere 120.2
2207 Male, age 80, right hemisphere 89.9
2657 Male, age 74, right hemisphere 88.1
2650 Female, age 94, left hemisphere 72.4
2049 Male, age 76, both hemispheres 44.2
1811 Female, age 42, unknown 27.7
Nucleus reuniens
nTPM: 187.1
2210 Female, age 85, left hemisphere 362.8
2205 Male, age 80, left hemisphere 154.1
2212 Female, age 67, left hemisphere 44.5
Nucleus rhomboideus
nTPM: 156.5
2280 Female, age 85, left hemisphere 345.8
2213 Female, age 67, left hemisphere 94.6
2206 Male, age 80, both hemispheres 29.0
Posterior thalamic nucleus
nTPM: 46.2
2266 Male, age 76, right hemisphere 97.8
2655 Male, age 74, right hemisphere 57.2
2495 Female, age 67, right hemisphere 29.8
2649 Female, age 94, both hemispheres 0.0
Pulvinar
nTPM: 91.9
2398 Male, age 61, left hemisphere 125.1
1899 Female, age 42, unknown 110.0
1932 Male, age 80, right hemisphere 108.9
1972 Male, age 62, unknown 101.7
2214 Male, age 76, right hemisphere 100.9
2582 Female, age 72, unknown 89.6
2724 Male, age 74, right hemisphere 83.2
2499 Male, age 66, unknown 78.9
1929 Male, age 48, unknown 72.9
2496 Female, age 67, right hemisphere 47.5
Subthalamic nucleus
nTPM: 181.9
2056 Female, age 72, unknown 290.2
2282 Male, age 61, both hemispheres 234.3
2124 Male, age 62, unknown 233.5
2216 Male, age 48, unknown 209.3
2275 Male, age 66, unknown 176.9
2658 Male, age 74, both hemispheres 149.7
2779 Female, age 42, unknown 139.5
2406 Female, age 72, unknown 21.8
Ventral posterolateral thalamic nucleus
nTPM: 125.8
2581 Female, age 72, unknown 191.6
2740 Male, age 76, right hemisphere 175.6
2570 Male, age 75, right hemisphere 153.0
2578 Male, age 74, both hemispheres 108.5
2397 Male, age 61, right hemisphere 85.3
2197 Male, age 80, both hemispheres 40.5
Ventral posteromedial thalamic nucleus
nTPM: 107.2
2281 Male, age 75, right hemisphere 178.2
2127 Male, age 76, right hemisphere 143.4
2653 Male, age 74, both hemispheres 90.5
2202 Male, age 61, left hemisphere 70.7
2758 Male, age 80, both hemispheres 53.2
Ventral thalamic nuclei
nTPM: 128.5
2858 Female, age 72, unknown 194.6
2652 Male, age 74, left hemisphere 175.7
2291 Female, age 72, unknown 174.7
2580 Male, age 66, unknown 139.1
1845 Male, age 48, unknown 105.6
1860 Male, age 76, both hemispheres 102.0
2204 Male, age 80, both hemispheres 99.7
2285 Male, age 62, unknown 83.7
1912 Female, age 42, unknown 81.1
Ventromedial nucleus
nTPM: 0.0
1822 Female, age 42, unknown 0.0
1982 Female, age 72, unknown 0.0
Zona incerta
nTPM: 143.6
2215 Male, age 66, unknown 203.7
2822 Male, age 74, right hemisphere 182.7
2663 Female, age 72, unknown 147.5
2403 Male, age 62, unknown 132.0
2208 Male, age 80, right hemisphere 52.2

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 420.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 420.0
FF:10154-103A1 76 years, female 420.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 69.2
Mouse sample Sample description nTPM
Thalamus
nTPM: 69.2
Samples: 4

Max nTPM: 73.7
Min nTPM: 66.4
Sample A Male 66.4
Sample B Male 68.8
Sample C Female 67.9
Sample D Female 73.7

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 13.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 13.4
69514530 Antisense, RP_050419_03_E11, Mouse strain C57BL/6J (56 days, male) 13.4

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