HIPPOCAMPAL FORMATION - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:24.8 nTPM
HPA:24.8 nTPM
GTEx:26.1 nTPM
FANTOM5:109.2 Scaled Tags Per Million
Pig:42.7 nTPM
Mouse:30.6 nTPM
Allen mouse:0.3 Expression energy

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 24.8
Sample id Sample description nTPM
Hippocampus
nTPM: 24.0
1898 Male, age 80, left hemisphere 24.7
2621 Female, age 67, right hemisphere 24.7
2529 Female, age 94, left hemisphere 24.1
1855 Male, age 76, left hemisphere 24.0
1911 Female, age 85, right hemisphere 23.7
2148 Female, age 91, left hemisphere 23.3
Dentate gyrus
nTPM: 23.5
2530 Female, age 94, left hemisphere 25.6
2010 Male, age 76, both hemispheres 25.2
2246 Female, age 85, both hemispheres 23.6
2531 Female, age 67, both hemispheres 23.2
1927 Female, age 91, both hemispheres 22.6
2528 Male, age 74, both hemispheres 21.2
Entorhinal gyrus
nTPM: 24.8
2686 Male, age 75, right hemisphere 25.3
2613 Female, age 94, left hemisphere 25.0
1787 Male, age 76, left hemisphere 24.8
2764 Male, age 80, right hemisphere 24.8
1938 Female, age 85, left hemisphere 24.7
2117 Female, age 91, right hemisphere 24.2
Hippocampus, CA1
nTPM: 23.7
2749 Male, age 80, left hemisphere 26.6
2045 Male, age 76, both hemispheres 25.1
1873 Female, age 85, both hemispheres 23.8
2527 Male, age 74, both hemispheres 22.1
2082 Female, age 91, right hemisphere 20.9
Hippocampus, CA2
nTPM: 22.6
1892 Male, age 76, both hemispheres 23.7
1940 Female, age 85, left hemisphere 23.6
1963 Male, age 80, left hemisphere 22.8
2437 Female, age 94, left hemisphere 21.9
2113 Female, age 91, right hemisphere 21.8
2249 Male, age 74, both hemispheres 21.8
Hippocampus, CA3
nTPM: 24.1
2620 Female, age 94, left hemisphere 26.5
2137 Male, age 80, left hemisphere 26.0
2861 Female, age 67, both hemispheres 24.3
1891 Female, age 85, both hemispheres 24.2
1867 Male, age 76, both hemispheres 23.9
2436 Male, age 74, both hemispheres 19.7
Parahippocampal cortex
nTPM: 23.4
1850 Male, age 80, both hemispheres 24.5
2245 Female, age 91, both hemispheres 24.1
2018 Male, age 76, both hemispheres 24.0
2532 Female, age 72, left hemisphere 23.8
2622 Female, age 67, right hemisphere 23.5
2692 Male, age 74, both hemispheres 23.5
1933 Female, age 85, both hemispheres 23.2
2693 Female, age 94, both hemispheres 22.8
1990 Female, age 91, right hemisphere 22.4
2250 Female, age 67, right hemisphere 22.3
Perirhinal gyrus
nTPM: 24.2
1794 Male, age 80, right hemisphere 25.2
1841 Female, age 85, right hemisphere 24.5
2848 Male, age 76, right hemisphere 24.4
1847 Female, age 91, left hemisphere 23.7
2521 Female, age 94, right hemisphere 23.5
Subiculum
nTPM: 23.9
2042 Male, age 76, both hemispheres 26.2
1901 Male, age 80, both hemispheres 25.7
1977 Female, age 85, both hemispheres 24.2
2619 Male, age 74, both hemispheres 23.3
2438 Female, age 94, left hemisphere 22.5
2729 Female, age 91, right hemisphere 21.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 26.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 26.1
Samples: 197

Max nTPM: 42.3
Min nTPM: 18.2
Std nTPM: 3.4
Median nTPM: 25.6
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 42.3
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 38.3
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 35.2
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 35.1
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 35.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 34.9
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 34.7
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 33.9
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 32.9
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 32.0
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 31.6
Show allShow less

HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 109.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 109.2
FF:10153-102I9 76 years, female 126.3
FF:10169-103B7 60 years, female 92.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 42.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 42.7
Samples: 4

Max nTPM: 48.8
Min nTPM: 36.2
Sample A Female 48.8
Sample B Female 43.3
Sample C Male 42.5
Sample D Male 36.2
Entorhinal cortex
nTPM: 36.7
Samples: 4

Max nTPM: 38.6
Min nTPM: 34.8
Sample A Female 38.6
Sample B Female 34.8
Sample C Male 38.4
Sample D Male 35.0
Subiculum
nTPM: 38.1
Samples: 4

Max nTPM: 46.0
Min nTPM: 35.0
Sample A Female 46.0
Sample B Female 35.0
Sample C Male 36.2
Sample D Male 35.1
Ventral hippocampus
nTPM: 39.0
Samples: 4

Max nTPM: 44.4
Min nTPM: 31.2
Sample A Female 38.3
Sample B Female 31.2
Sample C Male 44.4
Sample D Male 42.2

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 30.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 30.0
Samples: 4

Max nTPM: 32.1
Min nTPM: 28.4
Sample A Male 28.4
Sample B Male 29.1
Sample C Female 30.2
Sample D Female 32.1
Hippocampal formation
nTPM: 30.7
Samples: 4

Max nTPM: 30.9
Min nTPM: 30.3
Sample A Male 30.9
Sample B Male 30.5
Sample C Female 30.9
Sample D Female 30.3

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 0.3
70474053 Antisense, RP_050614_04_G09, Mouse strain C57BL/6J (56 days, male) 0.3

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.