MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:113.3 nTPM
HPA:113.3 nTPM
GTEx:94.8 nTPM
FANTOM5:219.0 Scaled Tags Per Million
Pig:81.3 nTPM
Mouse:121.1 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 113.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 91.9
2019 Male, age 18, unknown 104.9
2586 Male, age 75, left hemisphere 101.7
1827 Male, age 72, unknown 95.6
2828 Female, age 72, unknown 94.7
1870 Female, age 42, unknown 93.4
1833 Male, age 53, unknown 88.9
1830 Male, age 51, unknown 88.6
2411 Female, age 72, unknown 87.2
2219 Male, age 76, both hemispheres 82.1
2666 Male, age 74, left hemisphere 81.5
Dorsal raphe nucleus
nTPM: 94.1
2298 Female, age 72, unknown 99.0
2750 Male, age 76, both hemispheres 97.2
1828 Male, age 53, unknown 94.4
2047 Male, age 72, unknown 90.3
2016 Female, age 72, unknown 89.9
Inferior colliculus
nTPM: 93.6
1848 Female, age 42, unknown 96.0
1890 Male, age 53, unknown 95.9
2097 Female, age 72, unknown 92.6
2849 Male, age 72, unknown 89.8
Median raphe nucleus
nTPM: 113.3
2220 Male, age 76, midline 113.3
Pedunculopontine tegmental nucleus
nTPM: 85.0
2334 Male, age 80, both hemispheres 91.4
1921 Female, age 85, both hemispheres 88.1
2338 Male, age 61, both hemispheres 75.5
Periaquaductal grey, anterior
nTPM: 104.2
2502 Female, age 75, unknown 112.7
1947 Male, age 18, unknown 100.1
1795 Male, age 51, unknown 99.7
Periaquaductal grey, dorsal
nTPM: 102.4
2850 Male, age 76, both hemispheres 128.3
1831 Male, age 72, unknown 98.3
1840 Male, age 53, unknown 93.4
2464 Female, age 72, unknown 89.4
Periaquaductal grey, lateral
nTPM: 110.0
2140 Male, age 76, both hemispheres 128.8
2272 Male, age 74, both hemispheres 108.2
2053 Male, age 18, unknown 92.9
Pretectal area
nTPM: 104.2
2273 Male, age 74, both hemispheres 116.0
1816 Male, age 51, unknown 112.5
2007 Male, age 72, unknown 110.7
1944 Female, age 72, unknown 110.0
1817 Female, age 42, unknown 107.0
2667 Female, age 75, unknown 106.1
1815 Male, age 53, unknown 105.5
2316 Male, age 76, right hemisphere 102.6
2224 Female, age 72, unknown 100.8
2825 Male, age 18, unknown 89.0
2407 Male, age 75, both hemispheres 85.9
Red nucleus
nTPM: 95.3
2785 Male, age 18, unknown 102.7
1821 Female, age 72, unknown 102.3
1954 Female, age 42, unknown 100.2
1904 Male, age 53, unknown 98.8
2725 Female, age 75, unknown 97.8
2503 Female, age 72, unknown 97.4
2227 Male, age 72, unknown 96.0
1865 Male, age 51, unknown 95.1
2769 Male, age 72, unknown 94.7
2823 Male, age 76, right hemisphere 92.0
2588 Male, age 74, left hemisphere 83.5
2584 Male, age 75, left hemisphere 83.2
Substantia nigra
nTPM: 104.9
1916 Female, age 42, unknown 128.3
1851 Male, age 51, unknown 112.4
2699 Male, age 18, unknown 107.7
1889 Female, age 72, unknown 107.5
2241 Male, age 72, unknown 106.2
1941 Male, age 53, unknown 104.6
2583 Male, age 75, right hemisphere 101.2
2409 Female, age 72, unknown 99.1
2590 Female, age 75, unknown 93.7
2665 Male, age 74, both hemispheres 88.4
Superior colliculus
nTPM: 96.5
1796 Male, age 53, unknown 107.7
2261 Male, age 18, unknown 106.2
2087 Female, age 72, unknown 101.1
2664 Male, age 75, both hemispheres 97.3
1913 Female, age 42, unknown 94.4
2668 Female, age 75, unknown 94.0
1995 Male, age 72, unknown 93.7
1839 Male, age 51, unknown 91.1
1895 Male, age 76, right hemisphere 90.0
2587 Male, age 74, left hemisphere 89.6
Ventral tegmental area
nTPM: 98.1
1915 Female, age 42, unknown 104.1
2410 Female, age 72, unknown 103.2
2218 Male, age 76, both hemispheres 99.7
2223 Female, age 72, unknown 96.9
1942 Male, age 51, unknown 95.8
2021 Male, age 53, unknown 89.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 94.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.8
Samples: 139

Max nTPM: 180.5
Min nTPM: 54.1
Std nTPM: 23.4
Median nTPM: 91.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 180.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 157.5
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 157.1
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 154.4
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 152.3
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 151.5
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 147.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 140.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 139.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 132.9
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 131.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 219.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 219.0
FF:10158-103A5 76 years, female 219.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 81.3
Pig sample Sample description nTPM
Midbrain
nTPM: 78.3
Samples: 4

Max nTPM: 98.3
Min nTPM: 66.9
Sample A Female 80.5
Sample B Female 66.9
Sample C Male 98.3
Sample D Male 67.4
Periaqueductal gray
nTPM: 65.6
Samples: 3

Max nTPM: 73.2
Min nTPM: 54.3
Sample B Female 69.4
Sample C Male 73.2
Sample D Male 54.3
Substantia nigra
nTPM: 63.6
Samples: 4

Max nTPM: 77.5
Min nTPM: 55.1
Sample A Female 77.5
Sample B Female 59.8
Sample C Male 62.1
Sample D Male 55.1
Superior colliculi
nTPM: 81.3
Samples: 4

Max nTPM: 96.7
Min nTPM: 67.3
Sample A Female 84.7
Sample B Female 67.3
Sample C Male 96.7
Sample D Male 76.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 121.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 121.2
Samples: 4

Max nTPM: 125.7
Min nTPM: 117.2
Sample A Male 117.2
Sample B Male 122.9
Sample C Female 125.7
Sample D Female 118.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
1138 Antisense, RP_Baylor_103133, Mouse strain C57BL/6J (56 days, male) 0.1
1140 Antisense, RP_Baylor_103133, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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