MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:55.9 nTPM
HPA:55.9 nTPM
GTEx:65.9 nTPM
FANTOM5:25.8 Scaled Tags Per Million
Pig:101.0 nTPM
Mouse:17.4 nTPM
Allen mouse:18.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 55.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 51.2
1870 Female, age 42, unknown 54.7
1830 Male, age 51, unknown 53.5
2666 Male, age 74, left hemisphere 53.4
2411 Female, age 72, unknown 51.9
1833 Male, age 53, unknown 51.5
2828 Female, age 72, unknown 50.1
2019 Male, age 18, unknown 49.8
1827 Male, age 72, unknown 49.3
2219 Male, age 76, both hemispheres 49.0
2586 Male, age 75, left hemisphere 48.5
Dorsal raphe nucleus
nTPM: 52.1
2047 Male, age 72, unknown 54.4
2016 Female, age 72, unknown 52.4
2298 Female, age 72, unknown 52.4
1828 Male, age 53, unknown 51.6
2750 Male, age 76, both hemispheres 49.4
Inferior colliculus
nTPM: 53.5
1890 Male, age 53, unknown 63.6
1848 Female, age 42, unknown 50.2
2097 Female, age 72, unknown 50.2
2849 Male, age 72, unknown 50.2
Median raphe nucleus
nTPM: 53.1
2220 Male, age 76, midline 53.1
Pedunculopontine tegmental nucleus
nTPM: 54.6
2338 Male, age 61, both hemispheres 59.0
2334 Male, age 80, both hemispheres 55.7
1921 Female, age 85, both hemispheres 49.0
Periaquaductal grey, anterior
nTPM: 51.2
1795 Male, age 51, unknown 51.8
1947 Male, age 18, unknown 51.6
2502 Female, age 75, unknown 50.0
Periaquaductal grey, dorsal
nTPM: 51.6
2850 Male, age 76, both hemispheres 53.5
1831 Male, age 72, unknown 52.7
2464 Female, age 72, unknown 50.9
1840 Male, age 53, unknown 49.1
Periaquaductal grey, lateral
nTPM: 52.2
2272 Male, age 74, both hemispheres 54.4
2140 Male, age 76, both hemispheres 51.8
2053 Male, age 18, unknown 50.5
Pretectal area
nTPM: 50.2
2825 Male, age 18, unknown 52.4
1817 Female, age 42, unknown 51.8
2224 Female, age 72, unknown 51.7
1944 Female, age 72, unknown 50.5
2407 Male, age 75, both hemispheres 50.4
2316 Male, age 76, right hemisphere 50.3
2273 Male, age 74, both hemispheres 50.2
2667 Female, age 75, unknown 49.6
1815 Male, age 53, unknown 48.8
2007 Male, age 72, unknown 48.6
1816 Male, age 51, unknown 48.0
Red nucleus
nTPM: 52.4
2769 Male, age 72, unknown 55.9
2227 Male, age 72, unknown 55.8
2503 Female, age 72, unknown 52.9
1821 Female, age 72, unknown 52.4
2588 Male, age 74, left hemisphere 52.3
2785 Male, age 18, unknown 51.9
1904 Male, age 53, unknown 51.4
1954 Female, age 42, unknown 51.4
2823 Male, age 76, right hemisphere 51.4
2584 Male, age 75, left hemisphere 51.1
2725 Female, age 75, unknown 51.1
1865 Male, age 51, unknown 50.6
Substantia nigra
nTPM: 52.1
2665 Male, age 74, both hemispheres 59.8
2590 Female, age 75, unknown 54.1
2409 Female, age 72, unknown 53.2
1851 Male, age 51, unknown 53.1
2699 Male, age 18, unknown 51.9
2583 Male, age 75, right hemisphere 50.7
1941 Male, age 53, unknown 50.0
2241 Male, age 72, unknown 50.0
1916 Female, age 42, unknown 49.4
1889 Female, age 72, unknown 49.2
Superior colliculus
nTPM: 51.4
2087 Female, age 72, unknown 58.4
2587 Male, age 74, left hemisphere 52.3
2668 Female, age 75, unknown 52.1
2261 Male, age 18, unknown 51.3
1839 Male, age 51, unknown 51.0
1913 Female, age 42, unknown 50.4
1995 Male, age 72, unknown 50.3
1895 Male, age 76, right hemisphere 50.0
1796 Male, age 53, unknown 49.7
2664 Male, age 75, both hemispheres 48.9
Ventral tegmental area
nTPM: 55.9
1915 Female, age 42, unknown 58.6
2021 Male, age 53, unknown 58.5
1942 Male, age 51, unknown 56.4
2218 Male, age 76, both hemispheres 54.8
2410 Female, age 72, unknown 54.2
2223 Female, age 72, unknown 53.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 65.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.9
Samples: 139

Max nTPM: 2388.9
Min nTPM: 9.1
Std nTPM: 200.5
Median nTPM: 41.5
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 2388.9
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 254.3
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 166.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 147.0
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 135.3
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 116.6
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 115.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 106.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 100.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 99.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 98.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 25.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 25.8
FF:10158-103A5 76 years, female 25.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 101.0
Pig sample Sample description nTPM
Midbrain
nTPM: 26.5
Samples: 4

Max nTPM: 39.4
Min nTPM: 10.5
Sample A Female 35.1
Sample B Female 20.8
Sample C Male 39.4
Sample D Male 10.5
Periaqueductal gray
nTPM: 6.4
Samples: 3

Max nTPM: 10.3
Min nTPM: 2.7
Sample B Female 10.3
Sample C Male 6.2
Sample D Male 2.7
Substantia nigra
nTPM: 101.0
Samples: 4

Max nTPM: 273.4
Min nTPM: 21.1
Sample A Female 65.7
Sample B Female 273.4
Sample C Male 21.1
Sample D Male 43.8
Superior colliculi
nTPM: 51.0
Samples: 4

Max nTPM: 62.0
Min nTPM: 33.9
Sample A Female 62.0
Sample B Female 55.4
Sample C Male 33.9
Sample D Male 52.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.4
Samples: 4

Max nTPM: 23.3
Min nTPM: 14.6
Sample A Male 23.3
Sample B Male 15.8
Sample C Female 14.6
Sample D Female 15.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 18.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.4
68743877 Antisense, RP_050203_01_G07, Mouse strain C57BL/6J (56 days, male) 18.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.