BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:65.2 nTPM
HPA:65.2 nTPM
GTEx:33.4 nTPM
FANTOM5:232.4 Scaled Tags Per Million
Pig:29.0 nTPM
Mouse:21.7 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA057052Antibody CAB034892
Glial cells Not detectedLow
Neuronal cells LowNot detected





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 65.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 40.6
2288 Male, age 75, left hemisphere 48.9
2846 Female, age 79, unknown 44.6
1854 Male, age 80, left hemisphere 42.2
2481 Female, age 94, left hemisphere 42.1
1857 Female, age 85, left hemisphere 40.0
2290 Female, age 72, unknown 37.7
1781 Male, age 74, unknown 35.8
2289 Male, age 61, right hemisphere 33.2
Claustrum
nTPM: 42.6
1956 Male, age 74, unknown 54.5
2292 Female, age 85, both hemispheres 51.7
2392 Female, age 94, both hemispheres 48.6
2196 Female, age 79, unknown 44.7
2491 Male, age 75, both hemispheres 41.4
2198 Male, age 80, both hemispheres 40.5
2284 Female, age 91, both hemispheres 36.3
2568 Male, age 61, both hemispheres 33.0
2645 Female, age 72, unknown 32.5
Globus pallidus, externus
nTPM: 58.4
2772 Female, age 79, unknown 72.0
1996 Male, age 80, right hemisphere 71.9
2395 Male, age 75, both hemispheres 67.4
2646 Male, age 61, right hemisphere 41.5
2567 Female, age 72, unknown 39.2
Globus pallidus, internus
nTPM: 65.2
2778 Female, age 91, both hemispheres 82.1
2111 Female, age 85, right hemisphere 80.1
2287 Male, age 75, right hemisphere 69.5
2037 Male, age 80, right hemisphere 66.5
1818 Male, age 74, unknown 63.3
2566 Female, age 72, unknown 51.1
2483 Female, age 94, right hemisphere 43.9
Nucleus accumbens
nTPM: 44.2
2391 Female, age 94, left hemisphere 63.5
2286 Male, age 75, left hemisphere 50.5
2698 Female, age 72, unknown 48.3
2732 Male, age 80, right hemisphere 45.0
1806 Female, age 85, left hemisphere 43.2
1783 Male, age 74, unknown 37.5
2824 Male, age 61, right hemisphere 32.9
1856 Female, age 91, right hemisphere 32.5
Nucleus basalis of Meynert
nTPM: 41.1
2821 Male, age 75, both hemispheres 46.5
2393 Male, age 80, right hemisphere 41.9
2484 Female, age 94, left hemisphere 39.8
2569 Male, age 61, both hemispheres 36.1
Nucleus of the diagonal band
nTPM: 33.6
1812 Female, age 91, both hemispheres 39.2
2775 Male, age 80, right hemisphere 33.3
1979 Male, age 74, unknown 32.3
2195 Female, age 85, both hemispheres 31.8
2029 Male, age 61, right hemisphere 31.2
Olfactory tubercle
nTPM: 33.5
1846 Male, age 80, right hemisphere 34.8
2487 Female, age 94, left hemisphere 33.9
2856 Male, age 75, right hemisphere 32.7
1998 Female, age 91, both hemispheres 32.6
Putamen
nTPM: 40.5
2482 Female, age 94, left hemisphere 55.3
1829 Male, age 74, unknown 42.1
1937 Female, age 91, right hemisphere 42.1
2466 Female, age 79, unknown 41.1
2489 Female, age 72, unknown 36.5
1838 Male, age 80, right hemisphere 34.4
2647 Male, age 75, left hemisphere 32.0
Septal nuclei
nTPM: 39.2
2394 Male, age 61, left hemisphere 47.3
2199 Male, age 80, right hemisphere 40.9
2031 Female, age 72, unknown 39.8
2629 Female, age 94, right hemisphere 38.2
2059 Female, age 85, both hemispheres 37.7
2009 Female, age 91, both hemispheres 36.6
1960 Male, age 74, unknown 33.9

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 33.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 29.2
Samples: 246

Max nTPM: 86.5
Min nTPM: 13.6
Std nTPM: 10.1
Median nTPM: 27.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 86.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 72.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 71.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 55.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 55.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 55.1
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 53.5
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 51.3
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 49.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 49.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 49.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 22.2
Samples: 246

Max nTPM: 182.6
Min nTPM: 6.6
Std nTPM: 15.0
Median nTPM: 18.8
GTEX-1HFI6-0011-R6b-SM-CM2SR 40-49 years, male 182.6
GTEX-1C6WA-0011-R6a-SM-7PBYP 60-69 years, male 95.3
GTEX-YFC4-0011-R6b-SM-4V6E1 40-49 years, female 91.1
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 85.6
GTEX-1EN7A-0011-R6b-SM-9QEHW 40-49 years, male 62.8
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 55.9
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 51.1
GTEX-1H3O1-0011-R6b-SM-CL54U 60-69 years, male 49.1
GTEX-1F48J-0011-R6a-SM-CJI2F 50-59 years, female 46.2
GTEX-WL46-0011-R6A-SM-3LK6X 50-59 years, male 44.9
GTEX-P44H-0011-R6A-SM-2XCF3 40-49 years, male 44.0
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Brain - Putamen (basal ganglia)
Average nTPM: 33.4
Samples: 205

Max nTPM: 119.5
Min nTPM: 13.2
Std nTPM: 12.3
Median nTPM: 31.5
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 119.5
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 66.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 64.3
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 63.5
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 63.2
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 62.3
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 61.4
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 61.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 55.3
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 53.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 52.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 232.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 67.7
FF:10164-103B2 76 years, female 67.7
Globus pallidus
Scaled Tags Per Million: 232.4
FF:10175-103C4 60 years, female 243.1
FF:10161-103A8 76 years, female 221.6
Nucleus accumbens
Scaled Tags Per Million: 168.2
FF:10037-101F1 23-56 years, mixed 168.2
Putamen
Scaled Tags Per Million: 69.6
FF:10176-103C5 60 years, female 69.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 29.0
Pig sample Sample description nTPM
Caudate
nTPM: 16.5
Samples: 4

Max nTPM: 19.4
Min nTPM: 14.0
Sample A Female 19.4
Sample B Female 16.6
Sample C Male 16.0
Sample D Male 14.0
Putamen
nTPM: 29.0
Samples: 4

Max nTPM: 45.6
Min nTPM: 19.9
Sample A Female 45.6
Sample B Female 19.9
Sample C Male 21.8
Sample D Male 28.7
Septum
nTPM: 26.0
Samples: 4

Max nTPM: 28.1
Min nTPM: 22.9
Sample A Female 27.8
Sample B Female 22.9
Sample C Male 28.1
Sample D Male 25.2
Ventral pallidum
nTPM: 27.1
Samples: 4

Max nTPM: 31.2
Min nTPM: 20.6
Sample A Female 20.6
Sample B Female 28.1
Sample C Male 28.5
Sample D Male 31.2

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 21.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 14.9
Samples: 4

Max nTPM: 16.2
Min nTPM: 13.5
Sample A Male 14.0
Sample B Male 13.5
Sample C Female 15.7
Sample D Female 16.2
Septum
nTPM: 21.7
Samples: 4

Max nTPM: 25.0
Min nTPM: 19.0
Sample A Male 19.0
Sample B Male 19.5
Sample C Female 25.0
Sample D Female 23.4
Ventral forebrain
nTPM: 15.3
Samples: 4

Max nTPM: 16.5
Min nTPM: 14.2
Sample A Male 14.3
Sample B Male 16.1
Sample C Female 14.2
Sample D Female 16.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.5
69174565 Antisense, RP_050329_03_A10, Mouse strain C57BL/6J (56 days, male) 0.8
72129290 Antisense, RP_051017_03_F06, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.6
69174565 Antisense, RP_050329_03_A10, Mouse strain C57BL/6J (56 days, male) 1.2
72129290 Antisense, RP_051017_03_F06, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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