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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:65.4 nTPM
HPA:65.4 nTPM
GTEx:123.1 nTPM
FANTOM5:246.8 Scaled Tags Per Million
Pig:71.0 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 65.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 55.1
1981 Female, age 72, midline 72.1
2048 Male, age 55, midline 57.5
2816 Male, age 47, midline 54.5
2194 Female, age 79, both hemispheres 47.5
2565 Male, age 75, midline 43.8
Cervical spinal cord, dorsal horn
nTPM: 65.4
2296 Male, age 66, both hemispheres 94.1
2173 Female, age 72, unknown 84.9
2069 Male, age 47, both hemispheres 69.3
1877 Male, age 55, unknown 57.8
2297 Male, age 75, both hemispheres 44.0
2721 Male, age 90, both hemispheres 42.5
Cervical spinal cord, ventral horn
nTPM: 60.5
2098 Female, age 72, unknown 86.1
2068 Male, age 55, unknown 62.8
2809 Male, age 90, both hemispheres 59.0
2480 Male, age 75, both hemispheres 55.7
2295 Male, age 66, both hemispheres 50.7
2820 Female, age 79, both hemispheres 48.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 123.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 123.1
Samples: 159

Max nTPM: 423.7
Min nTPM: 36.7
Std nTPM: 43.8
Median nTPM: 122.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 423.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 232.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 212.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 193.2
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 186.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 183.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 183.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 183.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 182.3
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 182.1
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 181.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 179.3
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 177.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 176.6
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 174.7
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 171.1
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 170.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 168.7
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 168.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 168.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 166.7
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 166.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 163.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 161.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 158.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 157.9
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 157.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 157.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 153.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 153.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 152.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 152.7
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 150.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 149.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 147.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 146.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 146.4
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 146.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 145.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 144.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 144.2
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 143.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 143.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 141.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 141.2
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 140.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 139.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 139.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 138.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 138.3
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 138.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 137.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 137.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 136.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 136.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 136.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 135.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 135.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 133.6
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 133.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 133.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 132.3
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 131.9
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 131.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 131.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 130.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 130.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 130.2
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 130.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 129.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 128.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 128.8
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 127.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 126.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 124.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 124.2
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 123.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 122.9
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 122.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 122.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 122.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 121.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 120.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 120.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 120.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 119.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 118.5
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 118.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 117.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 115.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 115.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 115.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 115.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 115.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 115.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 114.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 114.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 114.1
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 113.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 113.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 112.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 112.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 110.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 110.4
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 110.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 110.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 109.2
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 108.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 108.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 108.1
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 105.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 103.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 102.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 98.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 98.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 98.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 97.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 96.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 96.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 95.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 94.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 91.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 90.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 90.1
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 90.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 90.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 89.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 89.3
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 87.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 86.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 84.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 84.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 83.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 83.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 81.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 81.8
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 80.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 79.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 75.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 75.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 74.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 71.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 71.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 71.2
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 69.4
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 67.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 66.4
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 64.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 64.4
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 63.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 63.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 59.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 48.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 47.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 46.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 45.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 45.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 45.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 36.7
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 246.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 246.8
FF:10181-103D1 60 years, female 256.3
FF:10159-103A6 76 years, female 237.2

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 71.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 69.6
Samples: 4

Max nTPM: 85.0
Min nTPM: 58.2
Sample A Female 58.2
Sample B Female 85.0
Sample C Male 71.9
Sample D Male 63.3
Ventral spinal cord
nTPM: 71.0
Samples: 4

Max nTPM: 81.6
Min nTPM: 60.9
Sample A Female 62.6
Sample B Female 78.9
Sample C Male 60.9
Sample D Male 81.6

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