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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:151.1 nTPM
HPA:151.1 nTPM
GTEx:382.4 nTPM
FANTOM5:74.8 Scaled Tags Per Million
Pig:60.1 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 151.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 144.9
2816 Male, age 47, midline 148.9
1981 Female, age 72, midline 145.5
2194 Female, age 79, both hemispheres 145.0
2565 Male, age 75, midline 144.9
2048 Male, age 55, midline 140.2
Cervical spinal cord, dorsal horn
nTPM: 138.7
2296 Male, age 66, both hemispheres 155.8
2173 Female, age 72, unknown 152.0
1877 Male, age 55, unknown 138.0
2069 Male, age 47, both hemispheres 134.0
2721 Male, age 90, both hemispheres 130.3
2297 Male, age 75, both hemispheres 122.0
Cervical spinal cord, ventral horn
nTPM: 151.1
2295 Male, age 66, both hemispheres 155.8
2480 Male, age 75, both hemispheres 155.3
2820 Female, age 79, both hemispheres 154.7
2068 Male, age 55, unknown 149.5
2809 Male, age 90, both hemispheres 146.1
2098 Female, age 72, unknown 145.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 382.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 382.4
Samples: 159

Max nTPM: 871.8
Min nTPM: 111.5
Std nTPM: 156.5
Median nTPM: 367.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 871.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 810.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 769.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 758.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 738.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 732.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 705.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 693.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 689.1
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 654.9
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 645.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 640.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 639.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 631.3
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 625.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 621.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 597.7
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 587.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 572.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 563.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 548.4
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 533.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 532.9
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 528.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 527.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 527.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 523.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 522.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 517.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 511.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 510.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 506.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 503.1
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 500.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 494.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 494.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 493.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 482.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 476.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 473.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 471.4
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 471.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 469.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 466.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 462.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 460.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 452.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 451.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 450.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 447.2
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 441.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 435.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 434.2
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 431.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 429.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 421.4
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 420.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 417.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 416.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 413.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 404.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 404.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 402.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 402.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 392.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 390.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 386.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 385.2
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 383.6
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 380.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 380.2
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 379.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 379.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 377.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 374.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 371.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 370.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 369.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 368.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 367.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 365.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 361.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 356.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 355.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 355.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 352.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 351.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 351.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 350.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 349.7
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 348.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 347.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 347.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 344.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 342.7
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 341.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 337.1
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 328.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 326.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 326.7
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 325.5
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 319.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 319.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 312.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 311.6
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 306.5
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 305.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 301.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 299.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 295.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 295.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 291.9
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 287.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 283.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 282.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 280.8
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 279.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 276.2
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 274.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 273.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 268.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 267.5
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 262.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 258.4
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 253.7
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 249.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 240.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 239.5
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 238.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 237.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 237.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 236.2
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 221.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 220.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 215.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 209.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 203.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 202.1
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 196.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 191.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 186.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 182.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 179.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 179.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 176.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 175.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 172.9
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 171.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 167.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 164.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 157.6
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 155.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 151.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 140.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 139.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 135.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 129.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 125.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 111.5
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 74.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 74.8
FF:10181-103D1 60 years, female 77.6
FF:10159-103A6 76 years, female 72.0

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 60.1
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 56.2
Samples: 4

Max nTPM: 65.4
Min nTPM: 48.7
Sample A Female 65.4
Sample B Female 52.3
Sample C Male 48.7
Sample D Male 58.2
Ventral spinal cord
nTPM: 60.1
Samples: 4

Max nTPM: 62.9
Min nTPM: 58.8
Sample A Female 59.5
Sample B Female 59.0
Sample C Male 58.8
Sample D Male 62.9

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