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RUNDC3A
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  • RUNDC3A
BRAIN HIPPOCAMPAL FORMATION Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Hippocampal formation
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Neuronal projections: High
Synapses: Not detected
Mouse brain, Intensity
Hippocampal formationi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
83.953
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:169.4 nTPM
HPA:169.4 nTPM
GTEx:249.4 nTPM
FANTOM5:118.8 Scaled Tags Per Million
Pig:205.2 nTPM
Mouse:244.2 nTPM
Allen mouse:9.5 Expression energy

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA023548
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses Not detected

HIPPOCAMPUS - Extended tissue profilei

For selected proteins extended tissue profiling is performed in addition to standard tissue microarrays. The section below contains results from the extended profiling.

, antibody HPA070733
Glial cells Not detected
Neuronal cells Not detected
Neuronal projections High
Synapses Not detected

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA023548Antibody HPA070733
Glial cells Not detectedNot detected
Neuronal cells LowNot detected





HIPPOCAMPAL FORMATION - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA023548
Hippocampal formation mean intensity 83.953
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Polymorph layer of the dentate gyrus 81.021
Molecular layer of the dentate gyrus 35.007
Granular dentate gyrus 63.724
CA1 - oriens layer 38.555
CA1 - pyramidal layer 62.882
CA1 - radiatum layer 45.269
CA2 - oriens layer 42.197
CA2 - pyramidal layer 70.561
CA2 - radiatum layer 47.229
CA3 - oriens layer 46.603
CA3 - pyramidal layer 83.953
CA3 - radiatum layer 51.753
Stratum lucidum 67.786
Lacunosum moleculare 33.498
Subiculum 73.197

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 169.4
Sample id Sample description nTPM
Hippocampus
nTPM: 161.2
2621 Female, age 67, right hemisphere 190.5
2148 Female, age 91, left hemisphere 174.1
1898 Male, age 80, left hemisphere 171.2
2529 Female, age 94, left hemisphere 152.4
1855 Male, age 76, left hemisphere 144.2
1911 Female, age 85, right hemisphere 135.0
Dentate gyrus
nTPM: 163.7
2531 Female, age 67, both hemispheres 204.6
1927 Female, age 91, both hemispheres 182.9
2530 Female, age 94, left hemisphere 176.5
2528 Male, age 74, both hemispheres 146.1
2246 Female, age 85, both hemispheres 138.8
2010 Male, age 76, both hemispheres 133.5
Entorhinal gyrus
nTPM: 134.6
2613 Female, age 94, left hemisphere 158.1
2764 Male, age 80, right hemisphere 150.9
1787 Male, age 76, left hemisphere 139.4
1938 Female, age 85, left hemisphere 131.5
2686 Male, age 75, right hemisphere 122.6
2117 Female, age 91, right hemisphere 104.9
Hippocampus, CA1
nTPM: 166.5
2749 Male, age 80, left hemisphere 226.5
2527 Male, age 74, both hemispheres 167.4
1873 Female, age 85, both hemispheres 148.6
2082 Female, age 91, right hemisphere 145.7
2045 Male, age 76, both hemispheres 144.1
Hippocampus, CA2
nTPM: 157.8
1963 Male, age 80, left hemisphere 198.5
1892 Male, age 76, both hemispheres 160.7
2437 Female, age 94, left hemisphere 158.5
2113 Female, age 91, right hemisphere 157.2
1940 Female, age 85, left hemisphere 141.5
2249 Male, age 74, both hemispheres 130.3
Hippocampus, CA3
nTPM: 167.0
2137 Male, age 80, left hemisphere 217.7
2861 Female, age 67, both hemispheres 217.5
2620 Female, age 94, left hemisphere 187.9
1867 Male, age 76, both hemispheres 132.5
2436 Male, age 74, both hemispheres 127.9
1891 Female, age 85, both hemispheres 118.7
Parahippocampal cortex
nTPM: 144.8
2245 Female, age 91, both hemispheres 197.6
2250 Female, age 67, right hemisphere 160.1
2622 Female, age 67, right hemisphere 151.8
1850 Male, age 80, both hemispheres 147.2
1990 Female, age 91, right hemisphere 139.4
2693 Female, age 94, both hemispheres 138.4
1933 Female, age 85, both hemispheres 137.5
2532 Female, age 72, left hemisphere 133.4
2018 Male, age 76, both hemispheres 130.8
2692 Male, age 74, both hemispheres 112.1
Perirhinal gyrus
nTPM: 169.4
2521 Female, age 94, right hemisphere 195.7
1847 Female, age 91, left hemisphere 186.7
1794 Male, age 80, right hemisphere 178.6
1841 Female, age 85, right hemisphere 150.8
2848 Male, age 76, right hemisphere 135.3
Subiculum
nTPM: 124.6
1901 Male, age 80, both hemispheres 133.9
2729 Female, age 91, right hemisphere 133.9
1977 Female, age 85, both hemispheres 130.9
2619 Male, age 74, both hemispheres 122.0
2438 Female, age 94, left hemisphere 120.9
2042 Male, age 76, both hemispheres 106.0

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 249.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 249.4
Samples: 197

Max nTPM: 944.3
Min nTPM: 19.4
Std nTPM: 133.0
Median nTPM: 253.9
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 944.3
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 647.2
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 603.4
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 520.2
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 504.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 500.3
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 495.0
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 492.7
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 487.2
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 480.5
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 472.5
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 464.3
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 462.4
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 454.5
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 447.8
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 428.7
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 417.8
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 415.9
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 414.8
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 402.9
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 399.8
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 398.5
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 394.2
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 377.9
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 375.2
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 373.8
GTEX-T5JC-0011-R1A-SM-32PM6 20-29 years, male 373.5
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 371.1
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 370.2
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 364.8
GTEX-P44G-0011-R1A-SM-2I3FE 30-39 years, male 363.7
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 363.1
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 360.1
GTEX-NL3H-0011-R1a-SM-48TDJ 60-69 years, male 357.2
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 356.9
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 352.8
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 351.9
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 351.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 346.1
GTEX-ZE7O-0011-R1a-SM-57WDM 50-59 years, female 345.6
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 342.6
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 340.1
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 338.5
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 335.4
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 333.5
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 333.1
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 331.3
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 331.0
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 330.6
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 330.4
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 328.3
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 324.5
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 323.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 321.0
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 319.8
GTEX-R55E-0011-R1A-SM-2TC6N 20-29 years, male 318.5
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 315.9
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 315.3
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 315.0
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 314.6
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 312.0
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 311.7
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 311.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 311.2
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 303.9
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 303.8
GTEX-1EWIQ-0011-R1a-SM-9OSX7 70-79 years, female 302.6
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 299.8
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 296.1
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 290.9
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 282.3
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 281.8
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 281.1
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 280.9
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 280.1
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 278.5
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 278.0
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 277.4
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 274.1
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 272.4
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 269.7
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 269.5
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 268.0
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 267.0
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 265.0
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 264.3
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 264.1
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 263.9
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 263.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 263.5
GTEX-1J8Q2-0011-R1a-SM-D4P2D 60-69 years, male 262.5
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 260.9
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 260.4
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 260.3
GTEX-TSE9-0011-R1A-SM-3DB7E 60-69 years, female 257.1
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 256.0
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 254.4
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 254.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 253.9
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 246.1
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 245.3
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 244.4
GTEX-1GF9V-0011-R1a-SM-CKZNQ 60-69 years, male 244.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 242.8
GTEX-PVOW-0011-R1A-SM-32PL6 40-49 years, male 242.6
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 241.2
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 239.8
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 239.4
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 238.2
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 235.7
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 235.5
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 235.4
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 233.5
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 231.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 229.8
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 227.8
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 225.0
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 224.8
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 222.1
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 220.0
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 216.2
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 215.7
GTEX-QVJO-0011-R1A-SM-2S1QI 60-69 years, female 214.2
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 211.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 207.4
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 207.3
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 201.9
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 201.7
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 200.0
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 196.5
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 194.7
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 193.1
GTEX-1HR98-0011-R1a-SM-ARZLQ 60-69 years, male 187.1
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 180.2
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 170.0
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 167.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 165.3
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 163.9
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 162.9
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 162.2
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 160.8
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 159.3
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 159.2
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 157.4
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 156.9
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 156.9
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 155.3
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 155.2
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 152.6
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 150.2
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 148.8
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 147.8
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 143.1
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 142.9
GTEX-QDT8-0011-R1A-SM-32PKS 30-39 years, female 140.1
GTEX-16NPV-0011-R1b-SM-7MGVZ 50-59 years, female 139.6
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 132.6
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 126.3
GTEX-QMR6-0011-R1A-SM-32PKW 50-59 years, male 124.5
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 123.2
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 123.1
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 121.5
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 110.7
GTEX-PWO3-0011-R1A-SM-2I5EW 60-69 years, female 100.2
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 97.4
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 95.4
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 90.6
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 90.3
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 89.4
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 88.2
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 87.8
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 87.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 82.9
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 82.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 82.2
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 79.7
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 79.2
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 77.9
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 69.7
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 69.5
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 69.4
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 68.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 65.8
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 62.2
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 60.0
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 53.4
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 52.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 52.2
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 52.0
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 51.1
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 50.2
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 48.6
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 47.4
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 44.5
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 40.9
GTEX-X4EP-0011-R1A-SM-3P624 60-69 years, female 26.4
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 19.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 118.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 118.8
FF:10169-103B7 60 years, female 136.0
FF:10153-102I9 76 years, female 101.5

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 205.2
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 157.8
Samples: 4

Max nTPM: 197.6
Min nTPM: 108.7
Sample A Female 197.6
Sample B Female 161.8
Sample C Male 163.0
Sample D Male 108.7
Entorhinal cortex
nTPM: 205.2
Samples: 4

Max nTPM: 233.5
Min nTPM: 177.1
Sample A Female 183.0
Sample B Female 227.3
Sample C Male 233.5
Sample D Male 177.1
Subiculum
nTPM: 158.2
Samples: 4

Max nTPM: 230.8
Min nTPM: 125.4
Sample A Female 230.8
Sample B Female 145.9
Sample C Male 130.8
Sample D Male 125.4
Ventral hippocampus
nTPM: 140.6
Samples: 4

Max nTPM: 162.4
Min nTPM: 109.3
Sample A Female 131.0
Sample B Female 109.3
Sample C Male 159.7
Sample D Male 162.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 244.2
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 244.2
Samples: 4

Max nTPM: 259.4
Min nTPM: 234.2
Sample A Male 242.1
Sample B Male 259.4
Sample C Female 234.2
Sample D Female 240.9
Hippocampal formation
nTPM: 218.2
Samples: 4

Max nTPM: 234.6
Min nTPM: 199.9
Sample A Male 234.6
Sample B Male 216.4
Sample C Female 199.9
Sample D Female 221.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 9.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.5
68745366 Antisense, RP_050210_01_G09, Mouse strain C57BL/6J (56 days, male) 9.5

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