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BRAIN THALAMUS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
PRIMARY MOUSE DATA
ANTIBODIES
AND
VALIDATION
Brain proteome
Thalamus
THALAMUS - Expression summary
Mouse brain, Intensity
Thalamusi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
129.514
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:109.4 nTPM
HPA:109.4 nTPM
FANTOM5:29.9 Scaled Tags Per Million
Pig:146.3 nTPM
Mouse:163.5 nTPM
Allen mouse:8.4 Expression energy

THALAMUS - Mouse brain profilei

Protein expression in mouse brain using immunofluorescence is reported as fluorescence intensity .

Read more
, antibody HPA023548
Thalamus mean intensity 129.514
intensityi

Protein expression in mouse brain using immunofluorescence is reported as mean fluorescence intensity .

Read more
FRONT BACK
Medial geniculate nucleus 22.820
Parafascicular thalamic nucleus 41.911
Pregeniculate nucleus 40.786
Stria terminalis 49.162
Zona incerta 29.553
Anterodorsal thalamic nucleus 90.260
Reticular thalamic nucleus 26.006
Vental anterior thalamic nucleus -
Medial habenular nucleus 64.767
Laterodorsal thalamic area 50.913
Paraventricular thalamic nucleus 129.514
Central medial thalamic area 44.402
Ventral lateral thalamic area -
Ventral medial thalamic area 30.857
Lateral habenulal nucleus 45.466
Ventral posterior thalamus 35.601
Anterior pretactal nucleus 24.101
Retromammillary nucleus 42.132

THALAMUS - HPA Brain RNA-seq
Max nTPM 109.4
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 86.7
2032 Female, age 42, unknown 106.2
2497 Male, age 66, unknown 91.1
2396 Male, age 61, right hemisphere 62.8
Centromedial thalamic nucleus
nTPM: 89.7
2401 Male, age 76, right hemisphere 112.9
2279 Female, age 85, left hemisphere 66.6
Habenula
nTPM: 105.7
1957 Male, age 80, both hemispheres 117.4
2203 Male, age 61, left hemisphere 113.5
2276 Male, age 66, unknown 100.6
2252 Male, age 62, unknown 91.2
Lateral geniculate body
nTPM: 99.1
2106 Female, age 67, right hemisphere 140.2
2399 Male, age 61, left hemisphere 121.0
1953 Male, age 62, unknown 109.8
2035 Female, age 72, unknown 106.8
2857 Male, age 74, right hemisphere 91.0
2659 Male, age 66, unknown 81.9
2841 Male, age 80, both hemispheres 74.0
2575 Female, age 94, right hemisphere 68.1
Lateral thalamic nuclei
nTPM: 96.1
2577 Male, age 74, both hemispheres 112.6
1903 Male, age 76, left hemisphere 111.4
2661 Female, age 72, unknown 101.2
2765 Female, age 67, both hemispheres 81.8
2573 Female, age 94, left hemisphere 73.5
Medial dorsal thalamic nucleus
nTPM: 103.1
2492 Male, age 75, right hemisphere 121.4
1859 Male, age 76, both hemispheres 120.5
1810 Male, age 48, unknown 117.3
2498 Male, age 66, unknown 116.6
2283 Male, age 80, right hemisphere 114.9
1971 Male, age 61, right hemisphere 107.2
2026 Male, age 62, unknown 103.3
2576 Male, age 74, both hemispheres 101.7
1930 Female, age 42, unknown 94.9
2660 Female, age 72, unknown 91.4
2402 Female, age 67, both hemispheres 90.1
2039 Female, age 72, unknown 85.3
2572 Female, age 94, right hemisphere 75.3
Medial geniculate body
nTPM: 95.1
1811 Female, age 42, unknown 114.1
2207 Male, age 80, right hemisphere 103.2
2657 Male, age 74, right hemisphere 94.4
2650 Female, age 94, left hemisphere 91.5
2217 Female, age 72, unknown 91.2
2571 Male, age 75, right hemisphere 91.2
2049 Male, age 76, both hemispheres 80.0
Nucleus reuniens
nTPM: 82.5
2212 Female, age 67, left hemisphere 100.1
2205 Male, age 80, left hemisphere 81.6
2210 Female, age 85, left hemisphere 65.9
Nucleus rhomboideus
nTPM: 84.0
2206 Male, age 80, both hemispheres 121.7
2280 Female, age 85, left hemisphere 65.9
2213 Female, age 67, left hemisphere 64.4
Posterior thalamic nucleus
nTPM: 92.9
2266 Male, age 76, right hemisphere 107.6
2655 Male, age 74, right hemisphere 96.7
2495 Female, age 67, right hemisphere 90.6
2649 Female, age 94, both hemispheres 76.7
Pulvinar
nTPM: 105.6
2398 Male, age 61, left hemisphere 121.3
1972 Male, age 62, unknown 116.5
2496 Female, age 67, right hemisphere 109.5
2582 Female, age 72, unknown 109.2
1932 Male, age 80, right hemisphere 108.3
2214 Male, age 76, right hemisphere 100.9
1929 Male, age 48, unknown 100.8
1899 Female, age 42, unknown 99.5
2499 Male, age 66, unknown 95.9
2724 Male, age 74, right hemisphere 93.9
Subthalamic nucleus
nTPM: 88.3
2658 Male, age 74, both hemispheres 101.1
2275 Male, age 66, unknown 98.3
2282 Male, age 61, both hemispheres 95.4
2406 Female, age 72, unknown 91.3
2124 Male, age 62, unknown 88.7
2779 Female, age 42, unknown 81.2
2216 Male, age 48, unknown 75.4
2056 Female, age 72, unknown 75.2
Ventral posterolateral thalamic nucleus
nTPM: 106.7
2740 Male, age 76, right hemisphere 122.4
2578 Male, age 74, both hemispheres 115.2
2197 Male, age 80, both hemispheres 109.5
2397 Male, age 61, right hemisphere 103.4
2581 Female, age 72, unknown 99.9
2570 Male, age 75, right hemisphere 89.7
Ventral posteromedial thalamic nucleus
nTPM: 109.4
2653 Male, age 74, both hemispheres 125.6
2758 Male, age 80, both hemispheres 122.9
2202 Male, age 61, left hemisphere 118.4
2281 Male, age 75, right hemisphere 92.5
2127 Male, age 76, right hemisphere 87.5
Ventral thalamic nuclei
nTPM: 97.7
2858 Female, age 72, unknown 108.9
1860 Male, age 76, both hemispheres 108.3
1845 Male, age 48, unknown 104.7
1912 Female, age 42, unknown 101.7
2652 Male, age 74, left hemisphere 101.4
2285 Male, age 62, unknown 97.6
2204 Male, age 80, both hemispheres 93.7
2580 Male, age 66, unknown 81.8
2291 Female, age 72, unknown 80.8
Ventromedial nucleus
nTPM: 92.4
1982 Female, age 72, unknown 101.6
1822 Female, age 42, unknown 83.1
Zona incerta
nTPM: 84.0
2208 Male, age 80, right hemisphere 99.8
2822 Male, age 74, right hemisphere 82.9
2663 Female, age 72, unknown 82.4
2215 Male, age 66, unknown 81.8
2403 Male, age 62, unknown 73.3

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 29.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 29.9
FF:10154-103A1 76 years, female 29.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 146.3
Pig sample Sample description nTPM
Thalamus
nTPM: 146.3
Samples: 4

Max nTPM: 206.0
Min nTPM: 65.0
Sample A Female 206.0
Sample B Female 109.8
Sample C Male 204.5
Sample D Male 65.0

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 163.5
Mouse sample Sample description nTPM
Thalamus
nTPM: 163.5
Samples: 4

Max nTPM: 173.5
Min nTPM: 156.3
Sample A Male 167.2
Sample B Male 156.3
Sample C Female 173.5
Sample D Female 156.8

THALAMUS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 8.4
Allen experiment id Experiment description Expression energy
Thalamus
Expression energy: 8.4
68745366 Antisense, RP_050210_01_G09, Mouse strain C57BL/6J (56 days, male) 8.4

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