BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:85.7 nTPM
HPA:85.7 nTPM
GTEx:54.3 nTPM
FANTOM5:58.3 Scaled Tags Per Million
Pig:15.2 nTPM
Mouse:26.9 nTPM
Allen mouse:2.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA022141Antibody HPA022882Antibody HPA027883
Glial cells LowNot detectedHigh
Neuronal cells LowNot detectedMedium





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 85.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 85.2
1857 Female, age 85, left hemisphere 87.7
1854 Male, age 80, left hemisphere 86.7
1781 Male, age 74, unknown 85.8
2289 Male, age 61, right hemisphere 85.0
2481 Female, age 94, left hemisphere 84.8
2288 Male, age 75, left hemisphere 84.1
2290 Female, age 72, unknown 83.7
2846 Female, age 79, unknown 83.7
Claustrum
nTPM: 83.6
2491 Male, age 75, both hemispheres 86.4
2568 Male, age 61, both hemispheres 85.5
2198 Male, age 80, both hemispheres 83.8
2284 Female, age 91, both hemispheres 83.8
2645 Female, age 72, unknown 83.3
2292 Female, age 85, both hemispheres 83.2
2392 Female, age 94, both hemispheres 82.5
2196 Female, age 79, unknown 82.3
1956 Male, age 74, unknown 81.3
Globus pallidus, externus
nTPM: 85.0
2646 Male, age 61, right hemisphere 86.1
2395 Male, age 75, both hemispheres 85.7
1996 Male, age 80, right hemisphere 85.4
2772 Female, age 79, unknown 84.3
2567 Female, age 72, unknown 83.4
Globus pallidus, internus
nTPM: 84.5
2483 Female, age 94, right hemisphere 87.6
2566 Female, age 72, unknown 86.3
2111 Female, age 85, right hemisphere 85.0
2778 Female, age 91, both hemispheres 85.0
1818 Male, age 74, unknown 84.2
2037 Male, age 80, right hemisphere 82.0
2287 Male, age 75, right hemisphere 81.5
Nucleus accumbens
nTPM: 85.7
1783 Male, age 74, unknown 87.7
1856 Female, age 91, right hemisphere 87.6
1806 Female, age 85, left hemisphere 87.0
2732 Male, age 80, right hemisphere 86.9
2286 Male, age 75, left hemisphere 85.3
2698 Female, age 72, unknown 84.4
2824 Male, age 61, right hemisphere 83.3
2391 Female, age 94, left hemisphere 83.0
Nucleus basalis of Meynert
nTPM: 84.9
2569 Male, age 61, both hemispheres 89.4
2393 Male, age 80, right hemisphere 85.2
2484 Female, age 94, left hemisphere 84.1
2821 Male, age 75, both hemispheres 80.9
Nucleus of the diagonal band
nTPM: 82.7
2029 Male, age 61, right hemisphere 84.1
1979 Male, age 74, unknown 83.2
2775 Male, age 80, right hemisphere 83.2
1812 Female, age 91, both hemispheres 81.9
2195 Female, age 85, both hemispheres 80.8
Olfactory tubercle
nTPM: 83.7
2487 Female, age 94, left hemisphere 86.7
1998 Female, age 91, both hemispheres 84.1
2856 Male, age 75, right hemisphere 82.2
1846 Male, age 80, right hemisphere 81.9
Putamen
nTPM: 84.9
2489 Female, age 72, unknown 86.4
2466 Female, age 79, unknown 86.0
2647 Male, age 75, left hemisphere 86.0
2482 Female, age 94, left hemisphere 85.9
1937 Female, age 91, right hemisphere 84.6
1829 Male, age 74, unknown 83.1
1838 Male, age 80, right hemisphere 82.5
Septal nuclei
nTPM: 82.2
2059 Female, age 85, both hemispheres 83.7
2394 Male, age 61, left hemisphere 83.7
2199 Male, age 80, right hemisphere 82.8
2009 Female, age 91, both hemispheres 81.7
1960 Male, age 74, unknown 81.5
2629 Female, age 94, right hemisphere 81.2
2031 Female, age 72, unknown 80.6

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 54.3
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 51.6
Samples: 246

Max nTPM: 96.4
Min nTPM: 23.9
Std nTPM: 10.3
Median nTPM: 51.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 96.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 82.7
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 81.7
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 80.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 78.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 78.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 73.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 73.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 73.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 72.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 71.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 53.5
Samples: 246

Max nTPM: 91.1
Min nTPM: 23.3
Std nTPM: 11.9
Median nTPM: 52.2
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 91.1
GTEX-1F88E-0011-R6a-SM-CKZNW 60-69 years, female 90.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 87.3
GTEX-13SLW-0011-R6a-SM-5O9BH 70-79 years, male 86.7
GTEX-12584-0011-R6a-SM-5NQ7C 40-49 years, male 84.8
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 84.5
GTEX-13JVG-0011-R6a-SM-5MR3E 60-69 years, male 81.7
GTEX-1GMRU-0011-R6b-SM-A9G3B 50-59 years, male 80.6
GTEX-13FLV-0011-R6a-SM-5KLZ4 50-59 years, male 78.7
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 78.4
GTEX-1RLM8-0011-R6a-SM-EYYXS 50-59 years, male 77.9
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Brain - Putamen (basal ganglia)
Average nTPM: 54.3
Samples: 205

Max nTPM: 96.0
Min nTPM: 31.9
Std nTPM: 11.1
Median nTPM: 52.9
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 96.0
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 83.5
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 83.5
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 82.7
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 82.3
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 80.2
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 79.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 79.0
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 77.6
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 75.3
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 75.1
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 58.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 58.3
FF:10164-103B2 76 years, female 58.3
Globus pallidus
Scaled Tags Per Million: 42.1
FF:10161-103A8 76 years, female 46.4
FF:10175-103C4 60 years, female 37.8
Nucleus accumbens
Scaled Tags Per Million: 35.7
FF:10037-101F1 23-56 years, mixed 35.7
Putamen
Scaled Tags Per Million: 53.7
FF:10176-103C5 60 years, female 53.7

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 15.2
Pig sample Sample description nTPM
Caudate
nTPM: 11.3
Samples: 4

Max nTPM: 13.2
Min nTPM: 8.0
Sample A Female 11.6
Sample B Female 13.2
Sample C Male 12.5
Sample D Male 8.0
Putamen
nTPM: 15.2
Samples: 4

Max nTPM: 22.7
Min nTPM: 11.9
Sample A Female 22.7
Sample B Female 12.0
Sample C Male 14.3
Sample D Male 11.9
Septum
nTPM: 13.0
Samples: 4

Max nTPM: 15.6
Min nTPM: 10.4
Sample A Female 15.6
Sample B Female 12.7
Sample C Male 13.4
Sample D Male 10.4
Ventral pallidum
nTPM: 12.9
Samples: 4

Max nTPM: 15.2
Min nTPM: 10.6
Sample A Female 10.9
Sample B Female 15.2
Sample C Male 14.8
Sample D Male 10.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 26.9
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 22.8
Samples: 4

Max nTPM: 24.9
Min nTPM: 20.4
Sample A Male 22.8
Sample B Male 23.2
Sample C Female 20.4
Sample D Female 24.9
Septum
nTPM: 26.9
Samples: 4

Max nTPM: 30.1
Min nTPM: 23.9
Sample A Male 27.3
Sample B Male 26.3
Sample C Female 30.1
Sample D Female 23.9
Ventral forebrain
nTPM: 26.2
Samples: 4

Max nTPM: 28.8
Min nTPM: 24.6
Sample A Male 25.1
Sample B Male 26.3
Sample C Female 28.8
Sample D Female 24.6

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.4
69080011 Antisense, RP_050324_01_C11, Mouse strain C57BL/6J (56 days, male) 2.4
Pallidum
Expression energy: 2.2
69080011 Antisense, RP_050324_01_C11, Mouse strain C57BL/6J (56 days, male) 2.2

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The Human Protein Atlas

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