BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:85.7 nTPM
HPA:85.7 nTPM
GTEx:80.6 nTPM
FANTOM5:82.9 Scaled Tags Per Million
Pig:41.1 nTPM
Mouse:81.7 nTPM
Allen mouse:1.5 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA026483
Glial cells Low
Neuronal cells Medium



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 85.7
Sample id Sample description nTPM
Caudate nucleus
nTPM: 83.8
2481 Female, age 94, left hemisphere 92.4
2288 Male, age 75, left hemisphere 85.9
1781 Male, age 74, unknown 83.4
2290 Female, age 72, unknown 83.1
2846 Female, age 79, unknown 83.0
1854 Male, age 80, left hemisphere 82.4
1857 Female, age 85, left hemisphere 82.1
2289 Male, age 61, right hemisphere 78.0
Claustrum
nTPM: 78.5
2198 Male, age 80, both hemispheres 82.2
2392 Female, age 94, both hemispheres 80.1
1956 Male, age 74, unknown 80.0
2196 Female, age 79, unknown 79.7
2491 Male, age 75, both hemispheres 78.9
2284 Female, age 91, both hemispheres 78.4
2568 Male, age 61, both hemispheres 77.5
2292 Female, age 85, both hemispheres 76.4
2645 Female, age 72, unknown 73.2
Globus pallidus, externus
nTPM: 83.9
1996 Male, age 80, right hemisphere 91.7
2772 Female, age 79, unknown 90.4
2646 Male, age 61, right hemisphere 83.3
2395 Male, age 75, both hemispheres 83.2
2567 Female, age 72, unknown 70.8
Globus pallidus, internus
nTPM: 85.7
2483 Female, age 94, right hemisphere 92.9
2287 Male, age 75, right hemisphere 91.8
2778 Female, age 91, both hemispheres 90.3
2037 Male, age 80, right hemisphere 86.2
1818 Male, age 74, unknown 83.6
2111 Female, age 85, right hemisphere 80.6
2566 Female, age 72, unknown 74.1
Nucleus accumbens
nTPM: 83.2
2286 Male, age 75, left hemisphere 89.2
2391 Female, age 94, left hemisphere 85.1
1806 Female, age 85, left hemisphere 83.7
2698 Female, age 72, unknown 83.3
1856 Female, age 91, right hemisphere 82.0
2732 Male, age 80, right hemisphere 82.0
2824 Male, age 61, right hemisphere 80.5
1783 Male, age 74, unknown 79.9
Nucleus basalis of Meynert
nTPM: 81.2
2484 Female, age 94, left hemisphere 82.3
2569 Male, age 61, both hemispheres 82.0
2393 Male, age 80, right hemisphere 81.7
2821 Male, age 75, both hemispheres 78.9
Nucleus of the diagonal band
nTPM: 85.7
1812 Female, age 91, both hemispheres 90.9
2775 Male, age 80, right hemisphere 90.3
2195 Female, age 85, both hemispheres 85.2
2029 Male, age 61, right hemisphere 82.7
1979 Male, age 74, unknown 79.1
Olfactory tubercle
nTPM: 82.9
1846 Male, age 80, right hemisphere 88.2
1998 Female, age 91, both hemispheres 84.5
2856 Male, age 75, right hemisphere 81.2
2487 Female, age 94, left hemisphere 77.6
Putamen
nTPM: 81.2
2482 Female, age 94, left hemisphere 88.9
2466 Female, age 79, unknown 86.3
1838 Male, age 80, right hemisphere 81.5
1937 Female, age 91, right hemisphere 81.2
1829 Male, age 74, unknown 80.3
2647 Male, age 75, left hemisphere 77.1
2489 Female, age 72, unknown 72.9
Septal nuclei
nTPM: 84.6
2031 Female, age 72, unknown 91.7
1960 Male, age 74, unknown 91.6
2059 Female, age 85, both hemispheres 85.1
2009 Female, age 91, both hemispheres 84.3
2629 Female, age 94, right hemisphere 82.6
2199 Male, age 80, right hemisphere 79.1
2394 Male, age 61, left hemisphere 77.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 80.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 75.6
Samples: 246

Max nTPM: 146.9
Min nTPM: 43.2
Std nTPM: 15.3
Median nTPM: 73.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 146.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 130.9
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 130.4
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 128.8
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 125.6
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 125.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 125.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 116.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 112.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 108.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 107.7
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 77.7
Samples: 246

Max nTPM: 126.6
Min nTPM: 44.8
Std nTPM: 12.9
Median nTPM: 76.5
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 126.6
GTEX-1A3MX-0011-R6a-SM-7P8S9 60-69 years, male 125.2
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 113.3
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 110.6
GTEX-11DXW-0011-R6a-SM-DO11N 40-49 years, male 108.6
GTEX-1EKGG-0011-R6a-SM-CL538 60-69 years, male 107.2
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 106.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 105.8
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 105.3
GTEX-1B8L1-0011-R6b-SM-7P8SU 60-69 years, male 105.1
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 101.8
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 80.6
Samples: 205

Max nTPM: 134.6
Min nTPM: 46.0
Std nTPM: 15.0
Median nTPM: 78.7
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 134.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 129.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 128.2
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 128.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 127.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 121.8
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 120.5
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 113.6
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 112.0
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 111.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 111.2
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 82.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 66.9
FF:10164-103B2 76 years, female 66.9
Globus pallidus
Scaled Tags Per Million: 82.3
FF:10175-103C4 60 years, female 105.7
FF:10161-103A8 76 years, female 58.9
Nucleus accumbens
Scaled Tags Per Million: 70.2
FF:10037-101F1 23-56 years, mixed 70.2
Putamen
Scaled Tags Per Million: 82.9
FF:10176-103C5 60 years, female 82.9

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 41.1
Pig sample Sample description nTPM
Caudate
nTPM: 37.6
Samples: 4

Max nTPM: 45.2
Min nTPM: 33.8
Sample A Female 33.8
Sample B Female 36.6
Sample C Male 45.2
Sample D Male 34.8
Putamen
nTPM: 41.1
Samples: 4

Max nTPM: 57.4
Min nTPM: 34.2
Sample A Female 34.2
Sample B Female 34.6
Sample C Male 57.4
Sample D Male 38.2
Septum
nTPM: 34.5
Samples: 4

Max nTPM: 40.2
Min nTPM: 30.5
Sample A Female 40.2
Sample B Female 33.3
Sample C Male 30.5
Sample D Male 34.1
Ventral pallidum
nTPM: 36.2
Samples: 4

Max nTPM: 41.3
Min nTPM: 33.1
Sample A Female 36.5
Sample B Female 41.3
Sample C Male 33.9
Sample D Male 33.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 81.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 79.8
Samples: 4

Max nTPM: 83.3
Min nTPM: 74.5
Sample A Male 81.1
Sample B Male 80.2
Sample C Female 83.3
Sample D Female 74.5
Septum
nTPM: 81.7
Samples: 4

Max nTPM: 86.9
Min nTPM: 76.8
Sample A Male 84.1
Sample B Male 86.9
Sample C Female 78.9
Sample D Female 76.8
Ventral forebrain
nTPM: 80.2
Samples: 4

Max nTPM: 85.0
Min nTPM: 75.5
Sample A Male 75.5
Sample B Male 85.0
Sample C Female 81.8
Sample D Female 78.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.5
70528408 Antisense, RP_050623_02_E06, Mouse strain C57BL/6J (56 days, male) 1.5
Pallidum
Expression energy: 1.1
70528408 Antisense, RP_050623_02_E06, Mouse strain C57BL/6J (56 days, male) 1.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.