BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:12.4 nTPM
HPA:12.4 nTPM
GTEx:10.9 nTPM
FANTOM5:18.8 Scaled Tags Per Million
Pig:5.2 nTPM
Mouse:21.2 nTPM
Allen mouse:0.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA055544
Glial cells Not detected
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 12.4
Sample id Sample description nTPM
Caudate nucleus
nTPM: 11.2
2481 Female, age 94, left hemisphere 12.9
2289 Male, age 61, right hemisphere 11.4
2846 Female, age 79, unknown 11.1
1781 Male, age 74, unknown 10.9
1854 Male, age 80, left hemisphere 10.9
2288 Male, age 75, left hemisphere 10.9
1857 Female, age 85, left hemisphere 10.6
2290 Female, age 72, unknown 10.6
Claustrum
nTPM: 11.1
2198 Male, age 80, both hemispheres 11.5
2292 Female, age 85, both hemispheres 11.5
2196 Female, age 79, unknown 11.2
2568 Male, age 61, both hemispheres 11.2
1956 Male, age 74, unknown 11.1
2491 Male, age 75, both hemispheres 11.0
2645 Female, age 72, unknown 10.9
2392 Female, age 94, both hemispheres 10.8
2284 Female, age 91, both hemispheres 10.7
Globus pallidus, externus
nTPM: 12.4
2567 Female, age 72, unknown 13.2
2646 Male, age 61, right hemisphere 12.8
1996 Male, age 80, right hemisphere 12.3
2772 Female, age 79, unknown 12.0
2395 Male, age 75, both hemispheres 11.9
Globus pallidus, internus
nTPM: 12.4
2111 Female, age 85, right hemisphere 12.8
2037 Male, age 80, right hemisphere 12.5
2287 Male, age 75, right hemisphere 12.5
2483 Female, age 94, right hemisphere 12.5
2778 Female, age 91, both hemispheres 12.5
2566 Female, age 72, unknown 12.4
1818 Male, age 74, unknown 11.7
Nucleus accumbens
nTPM: 10.9
2391 Female, age 94, left hemisphere 11.9
2286 Male, age 75, left hemisphere 11.6
1806 Female, age 85, left hemisphere 11.2
2732 Male, age 80, right hemisphere 11.0
2698 Female, age 72, unknown 10.9
2824 Male, age 61, right hemisphere 10.6
1783 Male, age 74, unknown 10.2
1856 Female, age 91, right hemisphere 9.6
Nucleus basalis of Meynert
nTPM: 11.5
2569 Male, age 61, both hemispheres 12.6
2821 Male, age 75, both hemispheres 11.6
2393 Male, age 80, right hemisphere 10.9
2484 Female, age 94, left hemisphere 10.9
Nucleus of the diagonal band
nTPM: 10.7
1812 Female, age 91, both hemispheres 11.3
1979 Male, age 74, unknown 10.8
2775 Male, age 80, right hemisphere 10.6
2029 Male, age 61, right hemisphere 10.5
2195 Female, age 85, both hemispheres 10.3
Olfactory tubercle
nTPM: 10.6
2856 Male, age 75, right hemisphere 11.1
1846 Male, age 80, right hemisphere 10.6
1998 Female, age 91, both hemispheres 10.6
2487 Female, age 94, left hemisphere 10.2
Putamen
nTPM: 11.2
2482 Female, age 94, left hemisphere 12.0
2489 Female, age 72, unknown 11.9
2647 Male, age 75, left hemisphere 11.8
1829 Male, age 74, unknown 11.2
2466 Female, age 79, unknown 10.8
1838 Male, age 80, right hemisphere 10.4
1937 Female, age 91, right hemisphere 10.4
Septal nuclei
nTPM: 10.7
2199 Male, age 80, right hemisphere 11.3
2059 Female, age 85, both hemispheres 10.9
1960 Male, age 74, unknown 10.8
2629 Female, age 94, right hemisphere 10.8
2009 Female, age 91, both hemispheres 10.7
2394 Male, age 61, left hemisphere 10.4
2031 Female, age 72, unknown 10.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 10.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 10.0
Samples: 246

Max nTPM: 17.2
Min nTPM: 5.7
Std nTPM: 2.2
Median nTPM: 9.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 17.2
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 16.9
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 16.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 15.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 15.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 15.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 15.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 15.0
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 14.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 13.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 13.9
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 9.0
Samples: 246

Max nTPM: 23.5
Min nTPM: 4.7
Std nTPM: 2.2
Median nTPM: 8.7
GTEX-X4EP-0011-R6A-SM-3P629 60-69 years, female 23.5
GTEX-1H3VE-0011-R6b-SM-A9G1M 40-49 years, male 15.4
GTEX-ZUA1-0011-R6b-SM-4YCDD 40-49 years, male 15.2
GTEX-1H23P-0011-R6b-SM-A9G1H 60-69 years, male 15.2
GTEX-14PHW-0011-R6b-SM-5YYAR 60-69 years, female 14.7
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 14.2
GTEX-11TTK-0011-R6b-SM-DNZZW 60-69 years, female 14.1
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 13.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 13.7
GTEX-1R46S-0011-R6a-SM-EZ6N6 60-69 years, female 13.5
GTEX-ZV68-0011-R6a-SM-51MSR 50-59 years, female 13.1
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Brain - Putamen (basal ganglia)
Average nTPM: 10.9
Samples: 205

Max nTPM: 18.9
Min nTPM: 5.9
Std nTPM: 2.2
Median nTPM: 10.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 18.9
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 17.6
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 16.7
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 16.5
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 16.3
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 15.5
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 15.5
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 15.4
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 15.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 14.9
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 14.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 18.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 14.9
FF:10164-103B2 76 years, female 14.9
Globus pallidus
Scaled Tags Per Million: 18.8
FF:10161-103A8 76 years, female 22.7
FF:10175-103C4 60 years, female 14.9
Nucleus accumbens
Scaled Tags Per Million: 15.2
FF:10037-101F1 23-56 years, mixed 15.2
Putamen
Scaled Tags Per Million: 8.6
FF:10176-103C5 60 years, female 8.6

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 5.2
Pig sample Sample description nTPM
Caudate
nTPM: 4.4
Samples: 4

Max nTPM: 4.9
Min nTPM: 4.0
Sample A Female 4.0
Sample B Female 4.5
Sample C Male 4.9
Sample D Male 4.1
Putamen
nTPM: 4.9
Samples: 4

Max nTPM: 5.7
Min nTPM: 4.2
Sample A Female 5.7
Sample B Female 4.2
Sample C Male 4.9
Sample D Male 4.8
Septum
nTPM: 5.1
Samples: 4

Max nTPM: 6.6
Min nTPM: 4.3
Sample A Female 4.7
Sample B Female 4.3
Sample C Male 6.6
Sample D Male 4.8
Ventral pallidum
nTPM: 5.2
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.1
Sample A Female 4.1
Sample B Female 5.1
Sample C Male 6.5
Sample D Male 5.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 21.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 21.2
Samples: 4

Max nTPM: 21.6
Min nTPM: 20.3
Sample A Male 21.6
Sample B Male 21.4
Sample C Female 21.6
Sample D Female 20.3
Septum
nTPM: 19.6
Samples: 4

Max nTPM: 21.1
Min nTPM: 18.2
Sample A Male 20.0
Sample B Male 18.2
Sample C Female 19.1
Sample D Female 21.1
Ventral forebrain
nTPM: 19.0
Samples: 4

Max nTPM: 21.1
Min nTPM: 16.5
Sample A Male 18.8
Sample B Male 21.1
Sample C Female 16.5
Sample D Female 19.4

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.6
80514028 Antisense, RP_071213_04_F12, Mouse strain C57BL/6J (56 days, male) 0.6
Pallidum
Expression energy: 0.5
80514028 Antisense, RP_071213_04_F12, Mouse strain C57BL/6J (56 days, male) 0.5

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