MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.9 nTPM
HPA:40.9 nTPM
GTEx:40.3 nTPM
FANTOM5:22.9 Scaled Tags Per Million
Mouse:6.4 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 40.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 37.8
2019 Male, age 18, unknown 40.4
2411 Female, age 72, unknown 39.6
1870 Female, age 42, unknown 39.0
2828 Female, age 72, unknown 38.5
2666 Male, age 74, left hemisphere 38.3
1833 Male, age 53, unknown 37.5
1830 Male, age 51, unknown 37.2
1827 Male, age 72, unknown 37.0
2219 Male, age 76, both hemispheres 36.2
2586 Male, age 75, left hemisphere 34.4
Dorsal raphe nucleus
nTPM: 38.3
1828 Male, age 53, unknown 39.2
2750 Male, age 76, both hemispheres 39.2
2298 Female, age 72, unknown 38.0
2047 Male, age 72, unknown 37.7
2016 Female, age 72, unknown 37.3
Inferior colliculus
nTPM: 38.1
1890 Male, age 53, unknown 39.5
2097 Female, age 72, unknown 38.5
1848 Female, age 42, unknown 37.9
2849 Male, age 72, unknown 36.5
Median raphe nucleus
nTPM: 36.6
2220 Male, age 76, midline 36.6
Pedunculopontine tegmental nucleus
nTPM: 39.1
2334 Male, age 80, both hemispheres 40.8
2338 Male, age 61, both hemispheres 39.3
1921 Female, age 85, both hemispheres 37.2
Periaquaductal grey, anterior
nTPM: 38.1
2502 Female, age 75, unknown 40.1
1795 Male, age 51, unknown 37.1
1947 Male, age 18, unknown 37.1
Periaquaductal grey, dorsal
nTPM: 36.2
2464 Female, age 72, unknown 37.5
1831 Male, age 72, unknown 36.7
2850 Male, age 76, both hemispheres 35.7
1840 Male, age 53, unknown 34.9
Periaquaductal grey, lateral
nTPM: 36.8
2272 Male, age 74, both hemispheres 37.7
2053 Male, age 18, unknown 36.9
2140 Male, age 76, both hemispheres 35.8
Pretectal area
nTPM: 37.3
1817 Female, age 42, unknown 40.3
2007 Male, age 72, unknown 39.4
2316 Male, age 76, right hemisphere 37.8
2667 Female, age 75, unknown 37.8
1816 Male, age 51, unknown 37.6
1815 Male, age 53, unknown 37.3
1944 Female, age 72, unknown 37.0
2224 Female, age 72, unknown 36.8
2825 Male, age 18, unknown 36.8
2273 Male, age 74, both hemispheres 35.6
2407 Male, age 75, both hemispheres 34.2
Red nucleus
nTPM: 40.9
1821 Female, age 72, unknown 44.1
1954 Female, age 42, unknown 43.1
2823 Male, age 76, right hemisphere 42.9
2227 Male, age 72, unknown 42.6
2503 Female, age 72, unknown 41.8
2769 Male, age 72, unknown 41.8
1904 Male, age 53, unknown 40.8
2785 Male, age 18, unknown 40.4
2588 Male, age 74, left hemisphere 40.1
1865 Male, age 51, unknown 39.8
2725 Female, age 75, unknown 37.9
2584 Male, age 75, left hemisphere 35.7
Substantia nigra
nTPM: 38.3
2665 Male, age 74, both hemispheres 45.1
2409 Female, age 72, unknown 40.3
1851 Male, age 51, unknown 38.8
1916 Female, age 42, unknown 38.3
1889 Female, age 72, unknown 38.1
2590 Female, age 75, unknown 37.5
2699 Male, age 18, unknown 37.1
1941 Male, age 53, unknown 37.0
2241 Male, age 72, unknown 35.9
2583 Male, age 75, right hemisphere 35.3
Superior colliculus
nTPM: 37.6
2587 Male, age 74, left hemisphere 40.0
2087 Female, age 72, unknown 39.3
1895 Male, age 76, right hemisphere 39.1
1839 Male, age 51, unknown 38.1
1913 Female, age 42, unknown 37.7
1796 Male, age 53, unknown 37.3
1995 Male, age 72, unknown 37.3
2668 Female, age 75, unknown 37.2
2261 Male, age 18, unknown 36.7
2664 Male, age 75, both hemispheres 33.6
Ventral tegmental area
nTPM: 38.3
2218 Male, age 76, both hemispheres 40.3
2021 Male, age 53, unknown 38.7
1915 Female, age 42, unknown 38.0
2410 Female, age 72, unknown 38.0
1942 Male, age 51, unknown 37.6
2223 Female, age 72, unknown 37.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 40.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.3
Samples: 139

Max nTPM: 184.8
Min nTPM: 10.6
Std nTPM: 27.6
Median nTPM: 33.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 184.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 146.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 129.5
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 124.1
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 114.7
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 111.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 96.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 93.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 87.3
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 86.9
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 86.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 22.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 22.9
FF:10158-103A5 76 years, female 22.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 6.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 6.4
Samples: 4

Max nTPM: 8.8
Min nTPM: 4.4
Sample A Male 8.8
Sample B Male 5.5
Sample C Female 4.4
Sample D Female 6.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68162269 Antisense, RP_041122_02_G03, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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