BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.6 nTPM
HPA:39.6 nTPM
GTEx:37.7 nTPM
FANTOM5:35.8 Scaled Tags Per Million
Mouse:7.2 nTPM
Allen mouse:0.0 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.6
Sample id Sample description nTPM
Caudate nucleus
nTPM: 38.6
2481 Female, age 94, left hemisphere 40.9
2290 Female, age 72, unknown 40.4
2846 Female, age 79, unknown 39.3
1857 Female, age 85, left hemisphere 38.6
1781 Male, age 74, unknown 38.4
2288 Male, age 75, left hemisphere 37.9
1854 Male, age 80, left hemisphere 37.3
2289 Male, age 61, right hemisphere 36.3
Claustrum
nTPM: 36.3
2196 Female, age 79, unknown 40.2
2284 Female, age 91, both hemispheres 36.5
2392 Female, age 94, both hemispheres 36.3
2198 Male, age 80, both hemispheres 36.2
2292 Female, age 85, both hemispheres 36.1
2645 Female, age 72, unknown 35.6
1956 Male, age 74, unknown 35.5
2568 Male, age 61, both hemispheres 35.4
2491 Male, age 75, both hemispheres 35.0
Globus pallidus, externus
nTPM: 38.2
2646 Male, age 61, right hemisphere 39.8
2772 Female, age 79, unknown 38.9
1996 Male, age 80, right hemisphere 38.5
2395 Male, age 75, both hemispheres 37.1
2567 Female, age 72, unknown 36.7
Globus pallidus, internus
nTPM: 38.5
2287 Male, age 75, right hemisphere 41.0
2483 Female, age 94, right hemisphere 40.5
1818 Male, age 74, unknown 39.0
2037 Male, age 80, right hemisphere 38.5
2778 Female, age 91, both hemispheres 38.1
2111 Female, age 85, right hemisphere 36.3
2566 Female, age 72, unknown 36.2
Nucleus accumbens
nTPM: 37.0
2391 Female, age 94, left hemisphere 38.6
1783 Male, age 74, unknown 38.0
2698 Female, age 72, unknown 37.8
1806 Female, age 85, left hemisphere 37.7
2286 Male, age 75, left hemisphere 37.0
1856 Female, age 91, right hemisphere 36.5
2732 Male, age 80, right hemisphere 35.8
2824 Male, age 61, right hemisphere 34.4
Nucleus basalis of Meynert
nTPM: 39.6
2484 Female, age 94, left hemisphere 41.2
2569 Male, age 61, both hemispheres 40.6
2821 Male, age 75, both hemispheres 39.1
2393 Male, age 80, right hemisphere 37.4
Nucleus of the diagonal band
nTPM: 35.5
1812 Female, age 91, both hemispheres 36.6
2029 Male, age 61, right hemisphere 35.7
2195 Female, age 85, both hemispheres 35.4
1979 Male, age 74, unknown 35.0
2775 Male, age 80, right hemisphere 34.9
Olfactory tubercle
nTPM: 35.8
1846 Male, age 80, right hemisphere 36.7
2856 Male, age 75, right hemisphere 36.1
1998 Female, age 91, both hemispheres 36.0
2487 Female, age 94, left hemisphere 34.2
Putamen
nTPM: 37.7
2482 Female, age 94, left hemisphere 39.4
2489 Female, age 72, unknown 39.3
2466 Female, age 79, unknown 37.9
1838 Male, age 80, right hemisphere 37.6
1937 Female, age 91, right hemisphere 37.2
1829 Male, age 74, unknown 36.7
2647 Male, age 75, left hemisphere 35.5
Septal nuclei
nTPM: 36.4
2394 Male, age 61, left hemisphere 39.1
2031 Female, age 72, unknown 37.8
2199 Male, age 80, right hemisphere 36.7
1960 Male, age 74, unknown 36.4
2009 Female, age 91, both hemispheres 35.6
2059 Female, age 85, both hemispheres 35.1
2629 Female, age 94, right hemisphere 34.4

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 37.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.9
Samples: 246

Max nTPM: 170.7
Min nTPM: 6.7
Std nTPM: 23.2
Median nTPM: 25.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 170.7
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 156.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 111.9
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 111.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 109.9
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 105.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 102.5
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 101.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 91.9
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 86.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 83.0
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 23.7
Samples: 246

Max nTPM: 226.8
Min nTPM: 3.3
Std nTPM: 27.4
Median nTPM: 15.7
GTEX-16XZZ-0011-R6a-SM-7IGNE 60-69 years, male 226.8
GTEX-1E2YA-0011-R6b-SM-CE6R2 50-59 years, male 200.0
GTEX-1CB4J-0011-R6b-SM-9WG7B 60-69 years, male 187.4
GTEX-X4XY-0011-R6B-SM-46MVB 60-69 years, male 144.1
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 116.5
GTEX-145MI-0011-R6a-SM-5PNZA 60-69 years, female 109.4
GTEX-17EVQ-0011-R6a-SM-7189U 70-79 years, male 82.4
GTEX-13OVJ-0011-R6b-SM-5L3GH 50-59 years, female 79.5
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 78.8
GTEX-11O72-0011-R6a-SM-DNZZQ 40-49 years, male 66.7
GTEX-1F75B-0011-R6a-SM-ARZMI 50-59 years, male 66.4
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Brain - Putamen (basal ganglia)
Average nTPM: 37.7
Samples: 205

Max nTPM: 201.1
Min nTPM: 8.5
Std nTPM: 28.2
Median nTPM: 27.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 201.1
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 154.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 139.2
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 132.3
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 117.5
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 109.9
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 108.1
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 107.7
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 99.1
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 98.2
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 97.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 16.3
FF:10164-103B2 76 years, female 16.3
Globus pallidus
Scaled Tags Per Million: 35.8
FF:10175-103C4 60 years, female 44.9
FF:10161-103A8 76 years, female 26.7
Nucleus accumbens
Scaled Tags Per Million: 15.6
FF:10037-101F1 23-56 years, mixed 15.6
Putamen
Scaled Tags Per Million: 18.1
FF:10176-103C5 60 years, female 18.1

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 7.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 5.9
Samples: 4

Max nTPM: 6.1
Min nTPM: 5.5
Sample A Male 6.1
Sample B Male 5.5
Sample C Female 6.1
Sample D Female 6.0
Septum
nTPM: 5.9
Samples: 4

Max nTPM: 6.4
Min nTPM: 5.4
Sample A Male 5.9
Sample B Male 5.4
Sample C Female 5.9
Sample D Female 6.4
Ventral forebrain
nTPM: 7.2
Samples: 4

Max nTPM: 10.0
Min nTPM: 5.0
Sample A Male 5.2
Sample B Male 10.0
Sample C Female 8.5
Sample D Female 5.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68162269 Antisense, RP_041122_02_G03, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.0
68162269 Antisense, RP_041122_02_G03, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

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