MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:16.5 nTPM
HPA:16.5 nTPM
GTEx:28.7 nTPM
FANTOM5:101.2 Scaled Tags Per Million
Pig:9.9 nTPM
Mouse:0.1 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 16.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 13.9
2666 Male, age 74, left hemisphere 15.1
2828 Female, age 72, unknown 15.1
1870 Female, age 42, unknown 14.8
2586 Male, age 75, left hemisphere 14.8
2019 Male, age 18, unknown 14.2
1827 Male, age 72, unknown 13.4
1833 Male, age 53, unknown 13.1
1830 Male, age 51, unknown 13.0
2411 Female, age 72, unknown 12.9
2219 Male, age 76, both hemispheres 12.1
Dorsal raphe nucleus
nTPM: 14.6
2047 Male, age 72, unknown 15.7
2016 Female, age 72, unknown 15.0
1828 Male, age 53, unknown 14.8
2750 Male, age 76, both hemispheres 14.2
2298 Female, age 72, unknown 13.5
Inferior colliculus
nTPM: 14.1
2097 Female, age 72, unknown 14.8
2849 Male, age 72, unknown 14.0
1848 Female, age 42, unknown 13.8
1890 Male, age 53, unknown 13.6
Median raphe nucleus
nTPM: 13.0
2220 Male, age 76, midline 13.0
Pedunculopontine tegmental nucleus
nTPM: 15.5
2338 Male, age 61, both hemispheres 20.8
2334 Male, age 80, both hemispheres 13.3
1921 Female, age 85, both hemispheres 12.5
Periaquaductal grey, anterior
nTPM: 15.5
1795 Male, age 51, unknown 18.7
1947 Male, age 18, unknown 14.0
2502 Female, age 75, unknown 13.8
Periaquaductal grey, dorsal
nTPM: 15.3
1831 Male, age 72, unknown 18.2
2850 Male, age 76, both hemispheres 15.9
1840 Male, age 53, unknown 13.5
2464 Female, age 72, unknown 13.4
Periaquaductal grey, lateral
nTPM: 16.5
2272 Male, age 74, both hemispheres 17.7
2053 Male, age 18, unknown 17.1
2140 Male, age 76, both hemispheres 14.6
Pretectal area
nTPM: 15.2
2407 Male, age 75, both hemispheres 17.9
1815 Male, age 53, unknown 16.5
2273 Male, age 74, both hemispheres 16.2
2224 Female, age 72, unknown 15.6
2667 Female, age 75, unknown 15.4
1944 Female, age 72, unknown 15.2
2825 Male, age 18, unknown 15.1
2316 Male, age 76, right hemisphere 14.6
1817 Female, age 42, unknown 14.2
1816 Male, age 51, unknown 13.0
2007 Male, age 72, unknown 13.0
Red nucleus
nTPM: 14.2
2823 Male, age 76, right hemisphere 15.8
2725 Female, age 75, unknown 15.5
2584 Male, age 75, left hemisphere 15.3
1954 Female, age 42, unknown 15.0
1865 Male, age 51, unknown 14.7
2227 Male, age 72, unknown 14.1
2785 Male, age 18, unknown 13.8
1821 Female, age 72, unknown 13.7
2503 Female, age 72, unknown 13.7
2769 Male, age 72, unknown 13.3
1904 Male, age 53, unknown 13.0
2588 Male, age 74, left hemisphere 12.8
Substantia nigra
nTPM: 14.5
1941 Male, age 53, unknown 16.6
1851 Male, age 51, unknown 16.4
2699 Male, age 18, unknown 15.2
2590 Female, age 75, unknown 14.7
2409 Female, age 72, unknown 14.5
1916 Female, age 42, unknown 14.1
2583 Male, age 75, right hemisphere 13.8
2241 Male, age 72, unknown 13.5
1889 Female, age 72, unknown 13.4
2665 Male, age 74, both hemispheres 13.1
Superior colliculus
nTPM: 15.2
1913 Female, age 42, unknown 18.2
1995 Male, age 72, unknown 17.1
1796 Male, age 53, unknown 16.1
2087 Female, age 72, unknown 15.3
2587 Male, age 74, left hemisphere 14.9
1839 Male, age 51, unknown 14.6
2261 Male, age 18, unknown 14.3
2664 Male, age 75, both hemispheres 14.3
2668 Female, age 75, unknown 14.2
1895 Male, age 76, right hemisphere 13.2
Ventral tegmental area
nTPM: 14.9
1915 Female, age 42, unknown 16.0
2223 Female, age 72, unknown 15.6
2218 Male, age 76, both hemispheres 15.4
2021 Male, age 53, unknown 14.9
1942 Male, age 51, unknown 13.9
2410 Female, age 72, unknown 13.6

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.7
Samples: 139

Max nTPM: 283.7
Min nTPM: 1.0
Std nTPM: 55.9
Median nTPM: 8.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 283.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 280.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 276.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 260.5
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 259.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 222.5
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 193.4
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 110.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 96.2
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 85.0
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 83.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 101.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 101.2
FF:10158-103A5 76 years, female 101.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 9.9
Pig sample Sample description nTPM
Midbrain
nTPM: 3.6
Samples: 4

Max nTPM: 5.4
Min nTPM: 2.0
Sample A Female 5.4
Sample B Female 2.0
Sample C Male 4.4
Sample D Male 2.5
Periaqueductal gray
nTPM: 2.9
Samples: 3

Max nTPM: 4.0
Min nTPM: 1.2
Sample B Female 1.2
Sample C Male 4.0
Sample D Male 3.5
Substantia nigra
nTPM: 9.9
Samples: 4

Max nTPM: 20.1
Min nTPM: 5.8
Sample A Female 7.2
Sample B Female 20.1
Sample C Male 5.8
Sample D Male 6.5
Superior colliculi
nTPM: 5.2
Samples: 4

Max nTPM: 8.3
Min nTPM: 3.8
Sample A Female 8.3
Sample B Female 3.8
Sample C Male 4.1
Sample D Male 4.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.2
Samples: 4

Max nTPM: 0.2
Min nTPM: 0.0
Sample A Male 0.2
Sample B Male 0.2
Sample C Female 0.2
Sample D Female 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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