MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:98.1 nTPM
HPA:98.1 nTPM
GTEx:120.9 nTPM
FANTOM5:140.7 Scaled Tags Per Million
Mouse:104.7 nTPM
Allen mouse:0.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 98.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 92.0
2586 Male, age 75, left hemisphere 99.2
2828 Female, age 72, unknown 97.8
1833 Male, age 53, unknown 95.0
1827 Male, age 72, unknown 94.1
1870 Female, age 42, unknown 93.2
1830 Male, age 51, unknown 91.6
2666 Male, age 74, left hemisphere 90.4
2411 Female, age 72, unknown 87.7
2019 Male, age 18, unknown 87.2
2219 Male, age 76, both hemispheres 84.2
Dorsal raphe nucleus
nTPM: 93.0
2298 Female, age 72, unknown 96.3
1828 Male, age 53, unknown 93.4
2750 Male, age 76, both hemispheres 93.1
2047 Male, age 72, unknown 92.1
2016 Female, age 72, unknown 89.9
Inferior colliculus
nTPM: 96.6
1848 Female, age 42, unknown 98.7
2849 Male, age 72, unknown 98.7
2097 Female, age 72, unknown 95.8
1890 Male, age 53, unknown 93.4
Median raphe nucleus
nTPM: 87.8
2220 Male, age 76, midline 87.8
Pedunculopontine tegmental nucleus
nTPM: 95.0
2338 Male, age 61, both hemispheres 100.9
2334 Male, age 80, both hemispheres 94.0
1921 Female, age 85, both hemispheres 89.9
Periaquaductal grey, anterior
nTPM: 89.0
1947 Male, age 18, unknown 93.4
1795 Male, age 51, unknown 88.8
2502 Female, age 75, unknown 85.0
Periaquaductal grey, dorsal
nTPM: 89.4
2850 Male, age 76, both hemispheres 94.6
1840 Male, age 53, unknown 89.6
1831 Male, age 72, unknown 86.7
2464 Female, age 72, unknown 86.7
Periaquaductal grey, lateral
nTPM: 88.5
2053 Male, age 18, unknown 89.6
2140 Male, age 76, both hemispheres 88.8
2272 Male, age 74, both hemispheres 87.1
Pretectal area
nTPM: 94.2
1817 Female, age 42, unknown 104.7
1816 Male, age 51, unknown 99.9
1944 Female, age 72, unknown 99.1
1815 Male, age 53, unknown 99.0
2667 Female, age 75, unknown 98.5
2007 Male, age 72, unknown 95.1
2825 Male, age 18, unknown 91.7
2224 Female, age 72, unknown 87.5
2273 Male, age 74, both hemispheres 87.1
2316 Male, age 76, right hemisphere 87.1
2407 Male, age 75, both hemispheres 86.7
Red nucleus
nTPM: 98.1
1821 Female, age 72, unknown 108.6
2769 Male, age 72, unknown 101.4
2823 Male, age 76, right hemisphere 101.0
1954 Female, age 42, unknown 100.3
2503 Female, age 72, unknown 100.1
2227 Male, age 72, unknown 100.0
2725 Female, age 75, unknown 100.0
1904 Male, age 53, unknown 99.5
1865 Male, age 51, unknown 97.8
2588 Male, age 74, left hemisphere 92.4
2785 Male, age 18, unknown 88.6
2584 Male, age 75, left hemisphere 87.2
Substantia nigra
nTPM: 94.5
1916 Female, age 42, unknown 104.8
2699 Male, age 18, unknown 104.1
2665 Male, age 74, both hemispheres 100.0
1889 Female, age 72, unknown 99.9
1851 Male, age 51, unknown 98.2
1941 Male, age 53, unknown 91.1
2583 Male, age 75, right hemisphere 91.1
2590 Female, age 75, unknown 88.9
2241 Male, age 72, unknown 84.7
2409 Female, age 72, unknown 82.3
Superior colliculus
nTPM: 93.3
1913 Female, age 42, unknown 100.9
2668 Female, age 75, unknown 96.6
1995 Male, age 72, unknown 96.3
2087 Female, age 72, unknown 96.2
2261 Male, age 18, unknown 94.6
1796 Male, age 53, unknown 92.0
1895 Male, age 76, right hemisphere 91.7
2587 Male, age 74, left hemisphere 91.6
1839 Male, age 51, unknown 87.3
2664 Male, age 75, both hemispheres 85.9
Ventral tegmental area
nTPM: 92.1
2410 Female, age 72, unknown 94.6
2218 Male, age 76, both hemispheres 94.4
1915 Female, age 42, unknown 93.8
2223 Female, age 72, unknown 91.5
1942 Male, age 51, unknown 89.1
2021 Male, age 53, unknown 89.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 120.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 120.9
Samples: 139

Max nTPM: 235.8
Min nTPM: 58.5
Std nTPM: 35.1
Median nTPM: 114.7
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 235.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 232.9
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 224.6
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 223.7
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 207.4
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 206.7
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 205.6
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 197.2
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 197.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 183.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 177.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 140.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 140.7
FF:10158-103A5 76 years, female 140.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 104.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 104.8
Samples: 4

Max nTPM: 113.4
Min nTPM: 98.1
Sample A Male 113.4
Sample B Male 100.5
Sample C Female 98.1
Sample D Female 107.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
71486970 Antisense, RP_050913_01_A08, Mouse strain C57BL/6J (56 days, male) 0.0

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