BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:105.9 nTPM
HPA:105.9 nTPM
GTEx:88.4 nTPM
FANTOM5:51.2 Scaled Tags Per Million
Pig:28.2 nTPM
Mouse:111.5 nTPM
Allen mouse:1.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA021416
Glial cells Not detected
Neuronal cells Medium


BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 105.9
Sample id Sample description nTPM
Caudate nucleus
nTPM: 103.9
2481 Female, age 94, left hemisphere 111.4
2288 Male, age 75, left hemisphere 105.0
2290 Female, age 72, unknown 103.6
2846 Female, age 79, unknown 103.4
1854 Male, age 80, left hemisphere 103.3
1857 Female, age 85, left hemisphere 102.4
1781 Male, age 74, unknown 102.2
2289 Male, age 61, right hemisphere 99.7
Claustrum
nTPM: 100.6
2198 Male, age 80, both hemispheres 102.1
2491 Male, age 75, both hemispheres 102.1
2392 Female, age 94, both hemispheres 101.3
2568 Male, age 61, both hemispheres 101.2
1956 Male, age 74, unknown 100.7
2284 Female, age 91, both hemispheres 100.4
2196 Female, age 79, unknown 100.0
2645 Female, age 72, unknown 98.8
2292 Female, age 85, both hemispheres 98.5
Globus pallidus, externus
nTPM: 104.3
2395 Male, age 75, both hemispheres 107.7
1996 Male, age 80, right hemisphere 107.5
2772 Female, age 79, unknown 106.8
2567 Female, age 72, unknown 99.9
2646 Male, age 61, right hemisphere 99.5
Globus pallidus, internus
nTPM: 105.9
2287 Male, age 75, right hemisphere 110.7
2483 Female, age 94, right hemisphere 110.6
1818 Male, age 74, unknown 106.8
2778 Female, age 91, both hemispheres 106.8
2037 Male, age 80, right hemisphere 105.1
2566 Female, age 72, unknown 101.6
2111 Female, age 85, right hemisphere 100.0
Nucleus accumbens
nTPM: 102.9
2286 Male, age 75, left hemisphere 106.7
1856 Female, age 91, right hemisphere 106.1
2391 Female, age 94, left hemisphere 103.5
1783 Male, age 74, unknown 102.6
2824 Male, age 61, right hemisphere 102.3
1806 Female, age 85, left hemisphere 101.6
2732 Male, age 80, right hemisphere 100.6
2698 Female, age 72, unknown 100.3
Nucleus basalis of Meynert
nTPM: 101.4
2484 Female, age 94, left hemisphere 103.3
2393 Male, age 80, right hemisphere 101.5
2821 Male, age 75, both hemispheres 101.2
2569 Male, age 61, both hemispheres 99.6
Nucleus of the diagonal band
nTPM: 102.6
1812 Female, age 91, both hemispheres 105.7
2775 Male, age 80, right hemisphere 104.0
2029 Male, age 61, right hemisphere 102.0
1979 Male, age 74, unknown 101.4
2195 Female, age 85, both hemispheres 99.8
Olfactory tubercle
nTPM: 101.3
1998 Female, age 91, both hemispheres 103.1
1846 Male, age 80, right hemisphere 101.8
2856 Male, age 75, right hemisphere 100.4
2487 Female, age 94, left hemisphere 100.0
Putamen
nTPM: 102.9
2482 Female, age 94, left hemisphere 107.2
2466 Female, age 79, unknown 106.0
1937 Female, age 91, right hemisphere 103.3
1838 Male, age 80, right hemisphere 102.8
2647 Male, age 75, left hemisphere 101.6
1829 Male, age 74, unknown 100.4
2489 Female, age 72, unknown 99.1
Septal nuclei
nTPM: 101.2
2031 Female, age 72, unknown 103.8
1960 Male, age 74, unknown 102.3
2009 Female, age 91, both hemispheres 101.0
2199 Male, age 80, right hemisphere 100.9
2059 Female, age 85, both hemispheres 100.5
2394 Male, age 61, left hemisphere 100.2
2629 Female, age 94, right hemisphere 99.3

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 88.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 81.3
Samples: 246

Max nTPM: 196.7
Min nTPM: 39.3
Std nTPM: 21.1
Median nTPM: 78.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 196.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 180.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 160.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 153.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 144.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 131.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 130.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 127.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 127.0
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 125.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 120.3
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 77.8
Samples: 246

Max nTPM: 161.6
Min nTPM: 30.6
Std nTPM: 20.2
Median nTPM: 74.9
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 161.6
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 149.9
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 140.2
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 135.2
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 133.1
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 132.0
GTEX-1LVA9-0011-R6a-SM-EYYWH 50-59 years, male 125.1
GTEX-18A6Q-0011-R6a-SM-7LG6R 60-69 years, male 123.6
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 123.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 121.8
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 117.9
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Brain - Putamen (basal ganglia)
Average nTPM: 88.4
Samples: 205

Max nTPM: 183.2
Min nTPM: 39.7
Std nTPM: 21.1
Median nTPM: 86.5
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 183.2
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 153.6
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 153.1
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 147.3
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 144.6
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 135.8
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 135.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 133.0
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 132.4
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 131.8
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 129.8
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 51.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 48.4
FF:10164-103B2 76 years, female 48.4
Globus pallidus
Scaled Tags Per Million: 51.2
FF:10175-103C4 60 years, female 58.4
FF:10161-103A8 76 years, female 44.0
Nucleus accumbens
Scaled Tags Per Million: 43.1
FF:10037-101F1 23-56 years, mixed 43.1
Putamen
Scaled Tags Per Million: 51.2
FF:10176-103C5 60 years, female 51.2

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 28.2
Pig sample Sample description nTPM
Caudate
nTPM: 24.9
Samples: 4

Max nTPM: 29.7
Min nTPM: 21.2
Sample A Female 21.2
Sample B Female 25.2
Sample C Male 23.6
Sample D Male 29.7
Putamen
nTPM: 27.7
Samples: 4

Max nTPM: 31.9
Min nTPM: 23.4
Sample A Female 31.9
Sample B Female 23.5
Sample C Male 31.9
Sample D Male 23.4
Septum
nTPM: 28.2
Samples: 4

Max nTPM: 33.3
Min nTPM: 21.7
Sample A Female 33.3
Sample B Female 30.2
Sample C Male 27.5
Sample D Male 21.7
Ventral pallidum
nTPM: 27.3
Samples: 4

Max nTPM: 33.5
Min nTPM: 21.3
Sample A Female 21.8
Sample B Female 33.5
Sample C Male 32.7
Sample D Male 21.3

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 111.5
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 111.6
Samples: 4

Max nTPM: 114.9
Min nTPM: 107.9
Sample A Male 107.9
Sample B Male 114.9
Sample C Female 108.8
Sample D Female 114.6
Septum
nTPM: 100.6
Samples: 4

Max nTPM: 106.2
Min nTPM: 94.9
Sample A Male 106.2
Sample B Male 98.4
Sample C Female 102.9
Sample D Female 94.9
Ventral forebrain
nTPM: 107.8
Samples: 4

Max nTPM: 117.7
Min nTPM: 101.7
Sample A Male 108.2
Sample B Male 103.5
Sample C Female 117.7
Sample D Female 101.7

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 1.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 1.6
68744785 Antisense, RP_050208_01_F06, Mouse strain C57BL/6J (56 days, male) 1.6
Pallidum
Expression energy: 1.2
68744785 Antisense, RP_050208_01_F06, Mouse strain C57BL/6J (56 days, male) 1.2

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The Human Protein Atlas

The Human Protein Atlas project is funded
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