MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:105.7 nTPM
HPA:105.7 nTPM
GTEx:94.1 nTPM
FANTOM5:44.7 Scaled Tags Per Million
Pig:37.8 nTPM
Mouse:109.8 nTPM
Allen mouse:0.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 105.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 102.5
2019 Male, age 18, unknown 106.7
1827 Male, age 72, unknown 106.2
2411 Female, age 72, unknown 104.6
2828 Female, age 72, unknown 103.0
1870 Female, age 42, unknown 102.7
2219 Male, age 76, both hemispheres 100.7
1830 Male, age 51, unknown 100.5
1833 Male, age 53, unknown 100.5
2666 Male, age 74, left hemisphere 100.3
2586 Male, age 75, left hemisphere 100.1
Dorsal raphe nucleus
nTPM: 103.8
2298 Female, age 72, unknown 106.5
1828 Male, age 53, unknown 105.1
2750 Male, age 76, both hemispheres 103.7
2016 Female, age 72, unknown 102.3
2047 Male, age 72, unknown 101.2
Inferior colliculus
nTPM: 102.9
2097 Female, age 72, unknown 104.9
1890 Male, age 53, unknown 103.7
2849 Male, age 72, unknown 101.6
1848 Female, age 42, unknown 101.5
Median raphe nucleus
nTPM: 102.3
2220 Male, age 76, midline 102.3
Pedunculopontine tegmental nucleus
nTPM: 103.3
2334 Male, age 80, both hemispheres 104.2
1921 Female, age 85, both hemispheres 103.5
2338 Male, age 61, both hemispheres 102.1
Periaquaductal grey, anterior
nTPM: 102.9
1947 Male, age 18, unknown 103.6
1795 Male, age 51, unknown 103.3
2502 Female, age 75, unknown 101.8
Periaquaductal grey, dorsal
nTPM: 101.7
1840 Male, age 53, unknown 103.4
2464 Female, age 72, unknown 102.7
1831 Male, age 72, unknown 100.8
2850 Male, age 76, both hemispheres 100.0
Periaquaductal grey, lateral
nTPM: 102.6
2272 Male, age 74, both hemispheres 106.2
2140 Male, age 76, both hemispheres 100.9
2053 Male, age 18, unknown 100.6
Pretectal area
nTPM: 105.7
2007 Male, age 72, unknown 110.5
1816 Male, age 51, unknown 109.9
1817 Female, age 42, unknown 108.9
1944 Female, age 72, unknown 108.7
2273 Male, age 74, both hemispheres 108.5
1815 Male, age 53, unknown 107.5
2667 Female, age 75, unknown 105.2
2224 Female, age 72, unknown 103.3
2825 Male, age 18, unknown 102.3
2407 Male, age 75, both hemispheres 100.0
2316 Male, age 76, right hemisphere 98.5
Red nucleus
nTPM: 103.5
1821 Female, age 72, unknown 106.5
2725 Female, age 75, unknown 105.7
2785 Male, age 18, unknown 105.4
2823 Male, age 76, right hemisphere 104.5
1865 Male, age 51, unknown 104.3
1954 Female, age 42, unknown 103.8
2503 Female, age 72, unknown 103.7
2227 Male, age 72, unknown 102.5
1904 Male, age 53, unknown 102.3
2588 Male, age 74, left hemisphere 102.3
2769 Male, age 72, unknown 102.2
2584 Male, age 75, left hemisphere 99.5
Substantia nigra
nTPM: 104.8
1916 Female, age 42, unknown 111.3
1889 Female, age 72, unknown 109.8
1851 Male, age 51, unknown 106.3
1941 Male, age 53, unknown 105.8
2241 Male, age 72, unknown 104.8
2409 Female, age 72, unknown 103.6
2699 Male, age 18, unknown 102.4
2590 Female, age 75, unknown 102.3
2665 Male, age 74, both hemispheres 101.3
2583 Male, age 75, right hemisphere 101.0
Superior colliculus
nTPM: 103.6
2087 Female, age 72, unknown 106.2
1895 Male, age 76, right hemisphere 105.3
2668 Female, age 75, unknown 105.0
2587 Male, age 74, left hemisphere 104.8
2261 Male, age 18, unknown 104.2
1796 Male, age 53, unknown 104.1
1995 Male, age 72, unknown 102.7
1913 Female, age 42, unknown 101.3
2664 Male, age 75, both hemispheres 101.2
1839 Male, age 51, unknown 101.1
Ventral tegmental area
nTPM: 103.6
2410 Female, age 72, unknown 108.2
2218 Male, age 76, both hemispheres 106.9
1915 Female, age 42, unknown 104.6
1942 Male, age 51, unknown 101.6
2223 Female, age 72, unknown 100.5
2021 Male, age 53, unknown 99.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 94.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 94.1
Samples: 139

Max nTPM: 188.9
Min nTPM: 41.9
Std nTPM: 24.5
Median nTPM: 91.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 188.9
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 174.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 159.6
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 148.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 143.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 142.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 141.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 135.7
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 135.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 132.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 132.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 44.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.7
FF:10158-103A5 76 years, female 44.7

MIDBRAIN - Pig RNA-seqi
Average nTPM 37.8
Pig sample Sample description nTPM
Midbrain
nTPM: 36.8
Samples: 4

Max nTPM: 44.1
Min nTPM: 28.5
Sample A Female 44.1
Sample B Female 39.4
Sample C Male 35.3
Sample D Male 28.5
Periaqueductal gray
nTPM: 29.4
Samples: 3

Max nTPM: 32.3
Min nTPM: 24.7
Sample B Female 32.3
Sample C Male 31.2
Sample D Male 24.7
Substantia nigra
nTPM: 34.7
Samples: 4

Max nTPM: 43.2
Min nTPM: 28.0
Sample A Female 43.2
Sample B Female 28.0
Sample C Male 34.4
Sample D Male 33.2
Superior colliculi
nTPM: 37.8
Samples: 4

Max nTPM: 45.8
Min nTPM: 26.7
Sample A Female 45.8
Sample B Female 36.5
Sample C Male 42.3
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 109.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 109.8
Samples: 4

Max nTPM: 115.8
Min nTPM: 104.9
Sample A Male 115.8
Sample B Male 104.9
Sample C Female 105.1
Sample D Female 113.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68744785 Antisense, RP_050208_01_F06, Mouse strain C57BL/6J (56 days, male) 0.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.