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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:60.5 nTPM
HPA:60.5 nTPM
GTEx:86.6 nTPM
FANTOM5:115.4 Scaled Tags Per Million
Pig:56.3 nTPM

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 60.5
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 59.8
2565 Male, age 75, midline 66.4
1981 Female, age 72, midline 62.5
2816 Male, age 47, midline 62.3
2048 Male, age 55, midline 54.2
2194 Female, age 79, both hemispheres 53.5
Cervical spinal cord, dorsal horn
nTPM: 58.5
2296 Male, age 66, both hemispheres 73.3
2173 Female, age 72, unknown 65.8
2069 Male, age 47, both hemispheres 62.0
1877 Male, age 55, unknown 56.7
2721 Male, age 90, both hemispheres 48.6
2297 Male, age 75, both hemispheres 44.5
Cervical spinal cord, ventral horn
nTPM: 60.5
2098 Female, age 72, unknown 79.9
2809 Male, age 90, both hemispheres 67.1
2480 Male, age 75, both hemispheres 57.4
2295 Male, age 66, both hemispheres 57.2
2068 Male, age 55, unknown 52.3
2820 Female, age 79, both hemispheres 49.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 86.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 86.6
Samples: 159

Max nTPM: 232.7
Min nTPM: 43.2
Std nTPM: 24.2
Median nTPM: 84.8
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 232.7
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 152.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 142.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 138.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 138.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 138.1
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 137.7
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 133.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 129.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 126.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 121.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 120.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 115.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 114.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 114.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 112.9
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 111.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 110.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 109.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 108.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 108.5
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 108.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 106.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 105.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 105.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 103.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 103.8
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 103.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 103.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 102.9
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 101.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 101.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 100.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 100.7
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 100.3
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 100.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 99.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 99.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 99.2
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 98.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 98.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 98.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 97.9
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 97.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 96.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 96.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 95.6
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 95.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 95.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 95.4
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 95.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 94.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 94.3
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 93.9
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 93.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 93.4
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 93.1
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 92.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 92.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 92.2
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 92.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 91.9
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 91.8
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 91.3
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 91.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 90.2
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 89.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 89.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 89.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 88.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 88.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 87.7
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 87.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 87.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 87.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 87.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 87.0
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 86.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 86.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 84.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 84.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 84.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 84.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 83.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 82.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 82.6
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 82.4
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 82.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 81.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 81.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 81.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 81.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 81.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 80.4
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 79.5
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 79.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 78.3
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 78.3
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 78.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 77.5
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 77.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 76.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 76.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 75.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 75.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 74.7
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 74.7
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 74.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 74.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 73.7
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 73.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 72.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 72.2
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 71.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 71.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 70.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 70.0
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 69.8
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 69.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 69.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 68.5
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 68.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 68.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 68.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 66.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 66.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 66.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 66.0
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 65.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 64.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 64.7
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 64.6
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 64.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 64.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 63.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 63.0
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 62.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 62.4
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 61.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 60.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 60.7
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 58.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 58.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 58.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 57.7
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 57.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 56.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 56.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 56.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 55.4
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 55.3
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 55.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 54.0
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 53.5
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 51.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 48.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 47.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 46.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 43.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 115.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 115.4
FF:10181-103D1 60 years, female 129.3
FF:10159-103A6 76 years, female 101.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 56.3
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 56.3
Samples: 4

Max nTPM: 77.8
Min nTPM: 43.6
Sample A Female 43.6
Sample B Female 54.7
Sample C Male 77.8
Sample D Male 48.9
Ventral spinal cord
nTPM: 54.4
Samples: 4

Max nTPM: 61.9
Min nTPM: 48.0
Sample A Female 49.6
Sample B Female 48.0
Sample C Male 58.0
Sample D Male 61.9

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