MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:59.0 nTPM
HPA:59.0 nTPM
GTEx:102.8 nTPM
FANTOM5:38.5 Scaled Tags Per Million
Pig:147.2 nTPM
Mouse:328.0 nTPM
Allen mouse:3.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 59.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 47.8
2586 Male, age 75, left hemisphere 81.5
1833 Male, age 53, unknown 49.1
2411 Female, age 72, unknown 49.1
2666 Male, age 74, left hemisphere 46.6
1870 Female, age 42, unknown 46.2
1830 Male, age 51, unknown 45.0
1827 Male, age 72, unknown 43.8
2219 Male, age 76, both hemispheres 39.5
2019 Male, age 18, unknown 38.4
2828 Female, age 72, unknown 38.4
Dorsal raphe nucleus
nTPM: 59.0
2047 Male, age 72, unknown 65.2
2298 Female, age 72, unknown 62.8
1828 Male, age 53, unknown 61.3
2016 Female, age 72, unknown 59.0
2750 Male, age 76, both hemispheres 46.6
Inferior colliculus
nTPM: 55.5
2849 Male, age 72, unknown 66.7
1890 Male, age 53, unknown 52.9
1848 Female, age 42, unknown 52.0
2097 Female, age 72, unknown 50.5
Median raphe nucleus
nTPM: 49.0
2220 Male, age 76, midline 49.0
Pedunculopontine tegmental nucleus
nTPM: 46.7
2334 Male, age 80, both hemispheres 53.1
1921 Female, age 85, both hemispheres 51.4
2338 Male, age 61, both hemispheres 35.5
Periaquaductal grey, anterior
nTPM: 44.5
1947 Male, age 18, unknown 45.7
1795 Male, age 51, unknown 44.2
2502 Female, age 75, unknown 43.5
Periaquaductal grey, dorsal
nTPM: 56.5
1840 Male, age 53, unknown 66.8
2850 Male, age 76, both hemispheres 59.1
2464 Female, age 72, unknown 50.6
1831 Male, age 72, unknown 49.4
Periaquaductal grey, lateral
nTPM: 47.7
2053 Male, age 18, unknown 51.7
2140 Male, age 76, both hemispheres 51.4
2272 Male, age 74, both hemispheres 39.9
Pretectal area
nTPM: 39.4
2825 Male, age 18, unknown 51.6
2224 Female, age 72, unknown 45.4
2407 Male, age 75, both hemispheres 42.8
2316 Male, age 76, right hemisphere 41.7
2667 Female, age 75, unknown 38.9
2273 Male, age 74, both hemispheres 38.8
1817 Female, age 42, unknown 38.7
1944 Female, age 72, unknown 37.0
1815 Male, age 53, unknown 34.0
2007 Male, age 72, unknown 33.7
1816 Male, age 51, unknown 30.8
Red nucleus
nTPM: 43.8
2584 Male, age 75, left hemisphere 59.1
2769 Male, age 72, unknown 49.7
1821 Female, age 72, unknown 48.3
2227 Male, age 72, unknown 48.3
1954 Female, age 42, unknown 48.2
2588 Male, age 74, left hemisphere 42.5
1865 Male, age 51, unknown 39.7
2823 Male, age 76, right hemisphere 39.4
2725 Female, age 75, unknown 39.0
1904 Male, age 53, unknown 37.1
2503 Female, age 72, unknown 37.1
2785 Male, age 18, unknown 37.1
Substantia nigra
nTPM: 50.2
2665 Male, age 74, both hemispheres 67.9
2583 Male, age 75, right hemisphere 66.6
2699 Male, age 18, unknown 54.8
1941 Male, age 53, unknown 48.3
2241 Male, age 72, unknown 48.1
2590 Female, age 75, unknown 48.1
1851 Male, age 51, unknown 46.7
1916 Female, age 42, unknown 43.0
1889 Female, age 72, unknown 41.8
2409 Female, age 72, unknown 36.6
Superior colliculus
nTPM: 39.8
2664 Male, age 75, both hemispheres 59.0
1839 Male, age 51, unknown 49.6
2668 Female, age 75, unknown 44.4
2587 Male, age 74, left hemisphere 41.6
1796 Male, age 53, unknown 39.8
1895 Male, age 76, right hemisphere 39.5
2261 Male, age 18, unknown 33.4
1995 Male, age 72, unknown 32.6
2087 Female, age 72, unknown 31.3
1913 Female, age 42, unknown 27.0
Ventral tegmental area
nTPM: 49.6
1942 Male, age 51, unknown 58.8
2021 Male, age 53, unknown 52.4
1915 Female, age 42, unknown 50.6
2223 Female, age 72, unknown 48.9
2218 Male, age 76, both hemispheres 45.0
2410 Female, age 72, unknown 41.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 102.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 102.8
Samples: 139

Max nTPM: 263.4
Min nTPM: 41.1
Std nTPM: 38.4
Median nTPM: 96.8
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 263.4
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 219.0
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 207.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 193.8
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 189.1
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 178.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 176.9
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 170.4
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 169.7
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 169.6
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 167.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 38.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 38.5
FF:10158-103A5 76 years, female 38.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 147.2
Pig sample Sample description nTPM
Midbrain
nTPM: 147.2
Samples: 4

Max nTPM: 207.1
Min nTPM: 80.8
Sample A Female 207.1
Sample B Female 162.5
Sample C Male 80.8
Sample D Male 138.3
Periaqueductal gray
nTPM: 105.1
Samples: 3

Max nTPM: 113.2
Min nTPM: 91.5
Sample B Female 110.7
Sample C Male 113.2
Sample D Male 91.5
Substantia nigra
nTPM: 144.2
Samples: 4

Max nTPM: 175.1
Min nTPM: 98.8
Sample A Female 175.1
Sample B Female 98.8
Sample C Male 142.8
Sample D Male 160.1
Superior colliculi
nTPM: 115.1
Samples: 4

Max nTPM: 205.1
Min nTPM: 45.1
Sample A Female 205.1
Sample B Female 45.1
Sample C Male 87.9
Sample D Male 122.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 328.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 328.0
Samples: 4

Max nTPM: 360.1
Min nTPM: 290.3
Sample A Male 360.1
Sample B Male 320.0
Sample C Female 290.3
Sample D Female 341.6

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.4
73512201 Antisense, RP_050713_01_C12, Mouse strain C57BL/6J (56 days, male) 3.4
70919442 Antisense, RP_050713_01_C12, Mouse strain C57BL/6J (56 days, male) 2.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.