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LUC7L3
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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:175.8 nTPM
GTEx:175.8 nTPM
FANTOM5:86.7 Scaled Tags Per Million
Pig:40.2 nTPM
Mouse:61.5 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 175.8
GTEx sample id Sample description nTPM
Retina
Average nTPM: 175.8
Samples: 105

Max nTPM: 296.0
Min nTPM: 114.3
Std nTPM: 40.4
Median nTPM:
413_1 59 years, female 296.0
501_1 88 years, male 270.6
142_1 61 years, female 269.2
139_1 64 years, female 266.3
162_1 79 years, female 266.3
137_1 83 years, male 255.7
217_1 76 years, male 250.7
89_1 63 years, male 249.6
43_1 64 years, female 245.4
415_1 77 years, female 241.0
17_1 71 years, male 235.1
491_1 89 years, female 233.0
145_1 84 years, male 231.5
414_1 84 years, female 231.4
149_1 88 years, male 224.8
490_1 67 years, female 220.6
315_1 62 years, female 218.9
314_1 67 years, male 218.8
32_1 67 years, male 218.7
4_1 88 years, female 216.7
119_1 70 years, female 214.3
396_1 62 years, male 207.1
265_1 87 years, male 202.1
117_1 61 years, male 201.2
322_1 76 years, male 197.5
120_1 70 years, female 197.2
288_1 66 years, female 193.9
313_1 79 years, female 193.4
81_1 67 years, male 191.5
35_1 74 years, female 191.3
379_1 60 years, male 190.7
266_1 85 years, male 189.4
404_1 82 years, female 187.7
153_1 70 years, female 187.6
126_1 63 years, male 187.3
6_1 73 years, female 186.5
348_1 84 years, male 185.5
311_1 78 years, male 185.3
264_1 73 years, female 184.9
324_1 76 years, male 183.7
316_1 62 years, male 183.6
308_1 70 years, female 181.6
466_1 57 years, female 178.6
2_1 77 years, female 177.1
468_1 89 years, male 176.6
499_1 55 years, female 176.0
286_1 68 years, female 174.3
229_1 69 years, female 173.3
18_1 88 years, male 172.8
109_1 81 years, female 171.9
307_1 66 years, female 170.8
254_1 77 years, female 170.6
452_1 88 years, female 166.8
495_1 57 years, female 164.9
447_1 81 years, male 164.6
41_1 94 years, female 164.2
389_1 86 years, female 163.7
115_1 83 years, male 163.5
189_1 76 years, male 162.6
375_1 74 years, female 162.2
503_1 68 years, male 162.0
295_1 61 years, female 161.9
335_1 73 years, female 161.1
42_1 85 years, male 160.2
354_1 81 years, female 156.9
506_1 65 years, male 155.7
321_1 62 years, female 155.6
9_1 66 years, female 154.5
291_1 76 years, male 153.5
518_1 75 years, female 153.5
386_1 76 years, male 150.5
517_1 88 years, male 150.3
237_1 82 years, male 149.8
246_1 77 years, male 149.6
405_1 91 years, male 149.2
218_1 71 years, female 148.5
349_1 83 years, male 148.4
406_1 79 years, male 147.8
353_1 82 years, female 144.5
384_1 83 years, male 141.9
394_1 75 years, female 141.9
376_1 75 years, female 141.5
356_1 87 years, female 141.1
320_1 89 years, female 140.1
292_1 71 years, male 139.7
350_1 84 years, female 137.9
173_1 67 years, male 137.5
319_1 81 years, male 136.4
243_1 75 years, male 136.0
318_1 68 years, male 136.0
351_1 91 years, male 135.8
177_1 74 years, male 134.3
352_1 62 years, male 133.5
317_1 60 years, male 131.0
251_1 78 years, male 128.4
99_1 64 years, male 128.2
526_1 61 years, male 126.0
293_1 68 years, female 124.1
163_1 78 years, male 123.7
172_1 72 years, female 123.3
377_1 82 years, female 122.4
480_1 63 years, male 119.2
355_1 70 years, female 116.7
425_1 59 years, female 116.6
347_1 72 years, male 114.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 86.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 86.7
FF:10030-101E3 24-65 years, mixed 86.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.2
Pig sample Sample description nTPM
Retina
nTPM: 40.2
Samples: 4

Max nTPM: 44.2
Min nTPM: 34.3
Sample A Female 44.2
Sample B Female 34.3
Sample C Male 39.2
Sample D Male 43.1

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 61.5
Mouse sample Sample description nTPM
Retina
nTPM: 61.5
Samples: 4

Max nTPM: 79.5
Min nTPM: 49.6
Sample A Male 49.6
Sample B Male 79.5
Sample C Female 55.0
Sample D Female 62.0

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The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.