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General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.
Gene namei
Official gene symbol, which is typically a short form of the gene name, according to HGNC.
Disease related genes Human disease related genes Plasma proteins Potential drug targets Transporters
Predicted locationi
All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.
Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).
The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.
Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.
Chromosome
17
Cytoband
q25.1
Chromosome location (bp)
74748628 - 74769353
Number of transcriptsi
Number of protein-coding transcripts from the gene as defined by Ensembl.
The Structure section provides predicted structures from the Alphafold protein structure database and available experimental structures from Protein Data Bank (PDB).
In the Structure drop-down menu all experimental structures from PDB are available for selection and display. The structures are displayed using the NGL Viewer and can be zoomed-in and rotated either manually or by checking the Autorotate box. The Color scheme can be selected to show the residue index, chain name or confidence score (as B-factors and pLDDT score for experimental and predicted structures, respectively). The positions for available antigen sequences in the structure are shown if Antigens is turned to ON, and the Variants slider can be used to show the positions of clinical and population variants.https://github.com/nglviewer/ngl
The protein browser displays the antigen location on the target protein(s) and the features of the target protein. The tabs at the top of the protein view section can be used to switch between the different splice variants to which an antigen has been mapped.
At the top of the view, the position of the antigen (identified by the corresponding HPA identifier) is shown as a green bar. A yellow triangle on the bar indicates a <100% sequence identity to the protein target.
Below the antigens, the maximum percent sequence identity of the protein to all other proteins from other human genes is displayed, using a sliding window of 10 aa residues (HsID 10) or 50 aa residues (HsID 50). The region with the lowest possible identity is always selected for antigen design, with a maximum identity of 60% allowed for designing a single-target antigen (read more).
The curve in blue displays the predicted antigenicity i.e. the tendency for different regions of the protein to generate an immune response, with peak regions being predicted to be more antigenic.The curve shows average values based on a sliding window approach using an in-house propensity scale. (read more).
If a signal peptide is predicted by a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius (turquoise) and/or transmembrane regions (orange) are predicted by MDM, these are displayed.
Low complexity regions are shown in yellow and InterPro regions in green. Common (purple) and unique (grey) regions between different splice variants of the gene are also displayed (read more), and at the bottom of the protein view is the protein scale.
SLC9A3R1-201
SLC9A3R1-202
SLC9A3R1-205
PROTEIN INFORMATIONi
The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.
The ENSP identifier links to the Ensembl website protein summary, while the ENST identifier links to the Ensembl website transcript summary for the selected splice variant. The data in the UniProt column can be expanded to show links to all matching UniProt identifiers for this protein.
The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.
The Gene Ontology terms assigned to this protein are listed if expanding the Gene ontology column. The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide (according to a majority of the signal peptide predictors SPOCTOPUS, SignalP 4.0, and Phobius) and the number of predicted transmembrane region(s) (according to MDM) are also reported.
Transporters Accessory Factors Involved in Transport Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Disease related genes Potential drug targets Human disease related genes Musculoskeletal diseases Skeletal diseases Urinary system diseases Kidney diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Kim et al 2014) Protein evidence (Ezkurdia et al 2014)
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GO:0001726 [ruffle] GO:0002009 [morphogenesis of an epithelium] GO:0003096 [renal sodium ion transport] GO:0005102 [signaling receptor binding] GO:0005515 [protein binding] GO:0005737 [cytoplasm] GO:0005886 [plasma membrane] GO:0005902 [microvillus] GO:0007009 [plasma membrane organization] GO:0007097 [nuclear migration] GO:0007191 [adenylate cyclase-activating dopamine receptor signaling pathway] GO:0007605 [sensory perception of sound] GO:0008013 [beta-catenin binding] GO:0008285 [negative regulation of cell population proliferation] GO:0008360 [regulation of cell shape] GO:0008361 [regulation of cell size] GO:0010642 [negative regulation of platelet-derived growth factor receptor signaling pathway] GO:0010766 [negative regulation of sodium ion transport] GO:0012505 [endomembrane system] GO:0014067 [negative regulation of phosphatidylinositol 3-kinase signaling] GO:0015185 [gamma-aminobutyric acid transmembrane transporter activity] GO:0015629 [actin cytoskeleton] GO:0016020 [membrane] GO:0016055 [Wnt signaling pathway] GO:0016324 [apical plasma membrane] GO:0017081 [chloride channel regulator activity] GO:0019902 [phosphatase binding] GO:0019904 [protein domain specific binding] GO:0019933 [cAMP-mediated signaling] GO:0022612 [gland morphogenesis] GO:0030033 [microvillus assembly] GO:0030036 [actin cytoskeleton organization] GO:0030165 [PDZ domain binding] GO:0030175 [filopodium] GO:0030336 [negative regulation of cell migration] GO:0030643 [cellular phosphate ion homeostasis] GO:0031526 [brush border membrane] GO:0031528 [microvillus membrane] GO:0031698 [beta-2 adrenergic receptor binding] GO:0031799 [type 2 metabotropic glutamate receptor binding] GO:0031800 [type 3 metabotropic glutamate receptor binding] GO:0031982 [vesicle] GO:0032415 [regulation of sodium:proton antiporter activity] GO:0032416 [negative regulation of sodium:proton antiporter activity] GO:0032420 [stereocilium] GO:0032426 [stereocilium tip] GO:0032782 [bile acid secretion] GO:0034613 [cellular protein localization] GO:0034635 [glutathione transport] GO:0034767 [positive regulation of ion transmembrane transport] GO:0042995 [cell projection] GO:0043495 [protein-membrane adaptor activity] GO:0043621 [protein self-association] GO:0044062 [regulation of excretion] GO:0044782 [cilium organization] GO:0044877 [protein-containing complex binding] GO:0045121 [membrane raft] GO:0045159 [myosin II binding] GO:0045177 [apical part of cell] GO:0045198 [establishment of epithelial cell apical/basal polarity] GO:0045199 [maintenance of epithelial cell apical/basal polarity] GO:0045859 [regulation of protein kinase activity] GO:0045930 [negative regulation of mitotic cell cycle] GO:0047485 [protein N-terminus binding] GO:0048471 [perinuclear region of cytoplasm] GO:0050780 [dopamine receptor binding] GO:0051683 [establishment of Golgi localization] GO:0051898 [negative regulation of protein kinase B signaling] GO:0051939 [gamma-aminobutyric acid import] GO:0060088 [auditory receptor cell stereocilium organization] GO:0060090 [molecular adaptor activity] GO:0060158 [phospholipase C-activating dopamine receptor signaling pathway] GO:0065003 [protein-containing complex assembly] GO:0070062 [extracellular exosome] GO:0070293 [renal absorption] GO:0070373 [negative regulation of ERK1 and ERK2 cascade] GO:0070851 [growth factor receptor binding] GO:0071944 [cell periphery] GO:0072659 [protein localization to plasma membrane] GO:0090090 [negative regulation of canonical Wnt signaling pathway] GO:0090660 [cerebrospinal fluid circulation] GO:0097225 [sperm midpiece] GO:0097291 [renal phosphate ion absorption] GO:0098739 [import across plasma membrane] GO:0098797 [plasma membrane protein complex] GO:0150104 [transport across blood-brain barrier] GO:2000146 [negative regulation of cell motility] GO:2001244 [positive regulation of intrinsic apoptotic signaling pathway]
Transporters Accessory Factors Involved in Transport Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Plasma proteins Disease related genes Potential drug targets Human disease related genes Musculoskeletal diseases Skeletal diseases Urinary system diseases Kidney diseases Mapped to neXtProt neXtProt - Evidence at protein level Protein evidence (Ezkurdia et al 2014)
Show all
GO:0001726 [ruffle] GO:0002009 [morphogenesis of an epithelium] GO:0005102 [signaling receptor binding] GO:0005515 [protein binding] GO:0005737 [cytoplasm] GO:0005886 [plasma membrane] GO:0005902 [microvillus] GO:0007009 [plasma membrane organization] GO:0007097 [nuclear migration] GO:0008013 [beta-catenin binding] GO:0008285 [negative regulation of cell population proliferation] GO:0008360 [regulation of cell shape] GO:0008361 [regulation of cell size] GO:0010642 [negative regulation of platelet-derived growth factor receptor signaling pathway] GO:0012505 [endomembrane system] GO:0014067 [negative regulation of phosphatidylinositol 3-kinase signaling] GO:0015185 [gamma-aminobutyric acid transmembrane transporter activity] GO:0015629 [actin cytoskeleton] GO:0016020 [membrane] GO:0016055 [Wnt signaling pathway] GO:0016324 [apical plasma membrane] GO:0017081 [chloride channel regulator activity] GO:0019902 [phosphatase binding] GO:0022612 [gland morphogenesis] GO:0030033 [microvillus assembly] GO:0030165 [PDZ domain binding] GO:0030175 [filopodium] GO:0031528 [microvillus membrane] GO:0031698 [beta-2 adrenergic receptor binding] GO:0031799 [type 2 metabotropic glutamate receptor binding] GO:0031800 [type 3 metabotropic glutamate receptor binding] GO:0031982 [vesicle] GO:0032415 [regulation of sodium:proton antiporter activity] GO:0032782 [bile acid secretion] GO:0034635 [glutathione transport] GO:0042995 [cell projection] GO:0043495 [protein-membrane adaptor activity] GO:0043621 [protein self-association] GO:0044782 [cilium organization] GO:0045198 [establishment of epithelial cell apical/basal polarity] GO:0045199 [maintenance of epithelial cell apical/basal polarity] GO:0045859 [regulation of protein kinase activity] GO:0045930 [negative regulation of mitotic cell cycle] GO:0048471 [perinuclear region of cytoplasm] GO:0051683 [establishment of Golgi localization] GO:0051898 [negative regulation of protein kinase B signaling] GO:0051939 [gamma-aminobutyric acid import] GO:0060090 [molecular adaptor activity] GO:0065003 [protein-containing complex assembly] GO:0070062 [extracellular exosome] GO:0070293 [renal absorption] GO:0070373 [negative regulation of ERK1 and ERK2 cascade] GO:0070851 [growth factor receptor binding] GO:0071944 [cell periphery] GO:0072659 [protein localization to plasma membrane] GO:0090090 [negative regulation of canonical Wnt signaling pathway] GO:0090660 [cerebrospinal fluid circulation] GO:0097225 [sperm midpiece] GO:0097291 [renal phosphate ion absorption] GO:0098739 [import across plasma membrane] GO:0098797 [plasma membrane protein complex] GO:0150104 [transport across blood-brain barrier] GO:2001244 [positive regulation of intrinsic apoptotic signaling pathway]
Predicted intracellular proteins Intracellular proteins predicted by MDM and MDSEC Human disease related genes Musculoskeletal diseases Skeletal diseases Urinary system diseases Kidney diseases Protein evidence (Ezkurdia et al 2014)